Project name: SIV

Status: done

Started: 2024-04-19 17:06:49
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Chain sequence(s) A: MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.9726
Maximal score value
1.2057
Average score
-1.1535
Total score value
-129.1874

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7752
2 S A -1.0612
3 D A -2.1441
4 P A -2.1880
5 R A -3.2526
6 E A -3.2738
7 R A -2.4550
8 I A -0.1517
9 P A -0.8120
10 P A -0.7345
11 G A -1.2455
12 N A -1.4759
13 S A -0.8569
14 G A -1.9807
15 E A -2.5627
16 E A -2.7592
17 T A -1.6899
18 I A 0.1067
19 G A -1.0719
20 E A -1.8808
21 A A -0.2229
22 F A 0.6417
23 E A -1.4677
24 W A -0.1693
25 L A 0.0000
26 N A -1.8004
27 R A -2.8569
28 T A -1.9385
29 V A -1.9414
30 E A -3.7642
31 E A -3.9726
32 I A -2.5634
33 N A -2.8790
34 R A -3.4497
35 E A -2.7366
36 A A 0.0000
37 V A -1.4081
38 N A -1.6140
39 H A -1.1107
40 L A 0.0000
41 P A -1.0430
42 R A -1.9554
43 E A -1.1632
44 L A -0.1952
45 I A 0.0000
46 F A -0.5395
47 Q A -1.4742
48 V A 0.0000
49 W A -0.6929
50 Q A -1.6514
51 R A -2.5631
52 S A 0.0000
53 W A -1.8825
54 E A -2.8491
55 Y A -1.7383
56 W A -1.5354
57 H A -2.1543
58 D A -3.4513
59 E A -3.2045
60 Q A -2.3577
61 G A -1.8657
62 M A -0.6504
63 S A -0.3218
64 P A -0.3082
65 S A 0.1939
66 Y A 0.5913
67 V A 0.0000
68 K A 0.3373
69 Y A 1.0404
70 R A 0.1760
71 Y A 0.0000
72 L A 0.0149
73 C A 0.0422
74 L A 0.3374
75 I A 0.0000
76 Q A -0.9904
77 K A -1.0539
78 A A -0.3598
79 L A 0.0000
80 F A 0.5627
81 M A -0.4044
82 H A -0.8181
83 C A -0.7120
84 K A -1.7528
85 K A -2.3351
86 G A -1.7453
87 C A -1.0501
88 R A -2.2543
89 C A -1.2164
90 L A 0.0387
91 G A -1.3467
92 E A -2.6078
93 G A -2.1386
94 H A -2.3429
95 G A -1.4563
96 A A -1.3295
97 G A -1.2333
98 G A -0.9311
99 W A -0.1036
100 R A -1.7938
101 P A -1.4155
102 G A -1.2037
103 P A -0.9672
104 P A -1.0486
105 P A -1.0074
106 P A -0.6935
107 P A -0.2895
108 P A -0.0454
109 P A -0.1934
110 G A 0.1036
111 L A 1.2057
112 A A 0.5742
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Laboratory of Theory of Biopolymers 2018