Project name: 17109d020422320

Status: done

Started: 2024-04-29 06:41:12
Settings
Chain sequence(s) H: QVQLQQPGSVLVRPGASVKLSCKASGYTFTSSWMHWTKQRPGQGLEWIGEIHPSSGNTHYNEKFKDKATLTVDTSSTTAYVDLSSLTSEDSAVYYCARTGHYFDYWGQGTTLTVSS
L: EIQMTQTTSSLSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGDTLPFTFGSGTKLEVK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-3.7513
Maximal score value
1.3172
Average score
-0.6526
Total score value
-145.5221

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5402
2 V H -1.2139
3 Q H -2.0449
4 L H 0.0000
5 Q H -2.1886
6 Q H 0.0000
7 P H -0.8684
8 G H -0.7958
9 S H 0.1064
11 V H 0.7661
12 L H 1.3172
13 V H -0.0261
14 R H -1.7922
15 P H -1.4585
16 G H -1.1617
17 A H -0.9160
18 S H -0.9965
19 V H -0.6780
20 K H -1.4683
21 L H 0.0000
22 S H -0.7339
23 C H 0.0000
24 K H -1.5858
25 A H 0.0000
26 S H -1.2323
27 G H -1.0500
28 Y H -0.4137
29 T H -0.1367
30 F H 0.0000
35 T H -0.2845
36 S H -0.2434
37 S H 0.0000
38 W H -0.1816
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 T H 0.0000
43 K H 0.0000
44 Q H -0.6848
45 R H -1.2949
46 P H -0.9771
47 G H -1.2679
48 Q H -1.6622
49 G H -1.0059
50 L H 0.0000
51 E H -0.6605
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 H H -0.7502
58 P H 0.0000
59 S H -0.7080
62 S H -0.9337
63 G H -1.2231
64 N H -1.7185
65 T H -0.9641
66 H H -0.9776
67 Y H -1.1131
68 N H 0.0000
69 E H -3.7020
70 K H -3.3446
71 F H 0.0000
72 K H -3.7513
74 D H -3.3002
75 K H -2.2951
76 A H 0.0000
77 T H -0.9402
78 L H 0.0000
79 T H -0.3498
80 V H -0.1065
81 D H -0.5306
82 T H -0.4356
83 S H -0.3946
84 S H -0.4884
85 T H -0.4788
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3441
89 V H 0.0000
90 D H -1.0207
91 L H 0.0000
92 S H -1.0226
93 S H -1.0035
94 L H 0.0000
95 T H -1.2984
96 S H -1.4150
97 E H -2.0092
98 D H 0.0000
99 S H -0.5627
100 A H 0.0000
101 V H -0.0070
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3277
107 T H -0.3029
108 G H -0.5174
109 H H -0.8517
114 Y H -0.1889
115 F H 0.0000
116 D H -0.2339
117 Y H -0.0515
118 W H -0.4592
119 G H 0.0000
120 Q H -1.8041
121 G H 0.0000
122 T H 0.0000
123 T H 0.0289
124 L H 0.0000
125 T H 0.0715
126 V H 0.0000
127 S H -0.6723
128 S H -0.8368
1 E L -2.2503
2 I L 0.0000
3 Q L -2.1936
4 M L 0.0000
5 T L -1.2499
6 Q L 0.0000
7 T L -0.5420
8 T L -0.4649
9 S L -0.7851
10 S L -1.0649
11 L L -0.5859
12 S L -0.8254
13 A L 0.0000
14 S L -0.7048
15 L L -0.0172
16 G L -1.3761
17 D L -1.9837
18 R L -2.5363
19 V L 0.0000
20 T L -0.5360
21 I L 0.0000
22 S L -0.8286
23 C L 0.0000
24 R L -2.9290
25 A L 0.0000
26 S L -2.2505
27 Q L -2.7541
28 D L -2.8418
29 I L 0.0000
36 S L -0.9320
37 N L -0.5904
38 Y L 0.0857
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.2752
46 P L -1.3667
47 D L -2.1665
48 G L -1.3566
49 T L -1.1022
50 V L -0.5902
51 K L -0.5183
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1044
56 Y L 0.0175
57 T L 0.0000
65 S L -0.8163
66 R L -1.3837
67 L L -0.3653
68 H L -0.5292
69 S L -0.5172
70 G L -0.4749
71 V L -0.1962
72 P L -0.2610
74 S L -0.3319
75 R L -1.1078
76 F L 0.0000
77 S L -0.5831
78 G L 0.0000
79 S L -0.8230
80 G L -1.0551
83 S L -1.2485
84 G L -1.7642
85 T L -2.3056
86 D L -2.3446
87 Y L 0.0000
88 S L -0.7865
89 L L 0.0000
90 T L -0.7671
91 I L 0.0000
92 S L -1.9134
93 N L -2.4325
94 L L 0.0000
95 E L -2.2060
96 Q L -1.8043
97 E L -1.8364
98 D L 0.0000
99 I L -0.7538
100 A L 0.0000
101 T L -0.9467
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0587
108 D L -0.4132
109 T L 0.0165
114 L L 0.5106
115 P L -0.3914
116 F L 0.0590
117 T L -0.4926
118 F L 0.0000
119 G L 0.0000
120 S L -0.9445
121 G L 0.0000
122 T L 0.0000
123 K L -1.9625
124 L L 0.0000
125 E L -1.1973
126 V L 0.2286
127 K L -1.1105
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Laboratory of Theory of Biopolymers 2018