Project name: HF2

Status: done

Started: 2024-04-24 10:47:13
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Chain sequence(s) X: KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
input PDB
Selected Chain(s) X
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with X chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-2.3068
Maximal score value
1.9619
Average score
-0.4573
Total score value
-58.9913

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K X -1.6326
2 V X 0.4591
3 F X 1.9619
4 G X -0.0777
5 R X -0.7627
6 C X -0.2506
7 E X -1.7837
8 L X 0.0000
9 A X 0.0000
10 A X -0.0618
11 A X -0.2075
12 M X 0.0000
13 K X -1.0646
14 R X -2.0070
15 H X -0.6553
16 G X -0.5644
17 L X 0.0000
18 D X -1.1730
19 N X -1.3622
20 Y X -0.1488
21 R X -1.8600
22 G X -0.7741
23 Y X -0.0817
24 S X -0.2868
25 L X 0.0000
26 G X 0.0000
27 N X -0.1643
28 W X 0.0000
29 V X 0.0000
30 C X 0.0000
31 A X 0.0000
32 A X 0.0000
33 K X -0.9184
34 F X 0.3366
35 E X -0.2621
36 S X -0.3162
37 N X -1.2880
38 F X 0.0404
39 N X -0.9744
40 T X -0.4070
41 Q X -1.1989
42 A X -0.2163
43 T X -0.2442
44 N X -1.6150
45 R X -2.3068
46 N X -1.6767
47 T X -0.6097
48 D X -1.8846
49 G X -0.9315
50 S X -0.2547
51 T X 0.0000
52 D X -0.2309
53 Y X 0.1988
54 G X 0.0000
55 I X 0.0000
56 L X 0.0000
57 Q X -0.2725
58 I X 0.0000
59 N X -0.2706
60 S X -0.4203
61 R X -1.6336
62 W X 0.8706
63 W X 0.4744
64 C X 0.0000
65 N X -0.5039
66 D X -1.8675
67 G X -0.9148
68 R X -1.9039
69 T X -0.4316
70 P X -0.3969
71 G X -0.2691
72 S X -0.5988
73 R X -1.9101
74 N X -0.2684
75 L X 1.0864
76 C X 0.0000
77 N X -0.9427
78 I X 0.0456
79 P X -0.0047
80 C X 0.0343
81 S X -0.1962
82 A X -0.0236
83 L X 0.0000
84 L X 0.3826
85 S X -0.0558
86 S X -0.5379
87 D X -1.8260
88 I X 0.0000
89 T X -0.0375
90 A X 0.0000
91 S X 0.0000
92 V X 0.0000
93 N X -0.5647
94 C X 0.0000
95 A X 0.0000
96 K X -0.5637
97 K X -0.5532
98 I X 0.0000
99 V X 0.0000
100 S X -0.5878
101 D X -1.8748
102 G X -0.7960
103 N X -1.3171
104 G X 0.0000
105 M X 0.0000
106 N X -0.5848
107 A X -0.0034
108 W X 0.5644
109 V X 1.8163
110 A X 0.3302
111 W X 0.0000
112 R X -2.0862
113 N X -1.9549
114 R X -2.0727
115 C X 0.0000
116 K X -1.7824
117 G X -0.7793
118 T X -0.4732
119 D X -1.7215
120 V X -0.1076
121 Q X -1.1124
122 A X -0.3571
123 W X 0.2175
124 I X 0.0433
125 R X -1.8646
126 G X -0.8036
127 C X 0.0000
128 R X -1.5526
129 L X 1.2005
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Laboratory of Theory of Biopolymers 2018