Project name: RNA polymerase

Status: done

Started: 2020-06-22 22:42:15
Settings
Chain sequence(s) A: VYRAFDIYNDKVAGFAKFLKFSNYQHEETIYNLLKDCPAVARLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT
C: SKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCE
B: FSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA
D: FSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRA
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode Yes
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       CABS:     Running CABS flex simulation                                                (00:38:15)
[INFO]       Analysis: Starting Aggrescan3D on model_10.pdb                                        (11:45:58)
[INFO]       Analysis: Starting Aggrescan3D on model_7.pdb                                         (11:46:45)
[INFO]       Analysis: Starting Aggrescan3D on model_9.pdb                                         (11:47:30)
[INFO]       Analysis: Starting Aggrescan3D on model_8.pdb                                         (11:48:15)
[INFO]       Analysis: Starting Aggrescan3D on model_11.pdb                                        (11:49:02)
[INFO]       Analysis: Starting Aggrescan3D on model_6.pdb                                         (11:49:47)
[INFO]       Analysis: Starting Aggrescan3D on model_4.pdb                                         (11:50:33)
[INFO]       Analysis: Starting Aggrescan3D on model_2.pdb                                         (11:51:18)
[INFO]       Analysis: Starting Aggrescan3D on model_5.pdb                                         (11:52:04)
[INFO]       Analysis: Starting Aggrescan3D on model_1.pdb                                         (11:52:50)
[INFO]       Analysis: Starting Aggrescan3D on model_0.pdb                                         (11:53:36)
[INFO]       Analysis: Starting Aggrescan3D on model_3.pdb                                         (11:54:23)
[INFO]       Analysis: Starting Aggrescan3D on input.pdb                                           (11:55:09)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (11:57:28)
[INFO]       Movie:    Creting movie with webm format                                              (12:22:12)
[INFO]       Main:     Simulation completed successfully.                                          (12:22:59)
Show buried residues

Minimal score value
-4.028
Maximal score value
3.1091
Average score
-0.6422
Total score value
-833.5163

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
31 V A 3.1091
32 Y A 2.8432
33 R A 1.7099
34 A A 0.0000
35 F A 0.0000
36 D A 0.0000
37 I A 0.0000
38 Y A -0.3425
39 N A -1.4171
40 D A -3.0989
41 K A -3.2726
42 V A -1.8743
43 A A 0.0000
44 G A 0.0000
45 F A 0.0000
46 A A 0.0000
47 K A 0.0000
48 F A 3.0860
49 L A 3.0316
50 K A 1.4768
77 F A 1.9021
78 S A 0.2543
79 N A 0.0978
80 Y A 0.3976
81 Q A -0.6114
82 H A 0.0000
83 E A 0.0000
84 E A -0.3734
85 T A 0.0000
86 I A 0.0000
87 Y A 0.0000
88 N A -1.2540
89 L A 0.0000
90 L A 0.0000
91 K A -2.4554
92 D A -2.7787
93 C A -1.9249
94 P A -1.4119
95 A A 0.0000
96 V A 0.0000
97 A A 0.0000
118 R A -2.5547
119 L A -1.1745
120 T A -1.2214
121 K A -2.3953
122 Y A 0.0000
123 T A 0.0000
124 M A 0.0000
125 A A 0.0000
126 D A 0.0000
127 L A 0.0000
128 V A 0.0000
129 Y A 0.0000
130 A A 0.0000
131 L A 0.0000
132 R A 0.0000
133 H A 0.0000
134 F A 0.0000
135 D A -2.0500
136 E A -3.1883
137 G A -2.1546
138 N A 0.0000
139 C A 0.0000
140 D A -2.8636
141 T A 0.0000
142 L A 0.0000
143 K A -1.9709
144 E A -1.0911
145 I A 0.0000
146 L A 0.0000
147 V A 0.4146
148 T A 0.0214
149 Y A 0.3102
150 N A -0.4851
151 C A 0.0241
152 C A -0.8133
153 D A -2.9891
154 D A -3.9580
155 D A -3.5815
156 Y A -2.3851
157 F A 0.0000
158 N A -3.7981
159 K A -4.0280
160 K A 0.0000
161 D A -2.5478
162 W A -1.0266
163 Y A 0.0000
164 D A 0.0000
165 F A 0.0000
166 V A 0.0877
167 E A -1.4823
168 N A 0.0000
169 P A -1.0183
170 D A -1.2334
171 I A 0.0000
172 L A -0.8904
173 R A -2.1023
174 V A -0.8359
175 Y A 0.0000
176 A A -1.3002
177 N A -1.3073
178 L A 0.0000
179 G A 0.0000
180 E A -1.6744
181 R A -1.6343
182 V A 0.0000
183 R A -1.2901
184 Q A -1.3599
185 A A 0.0000
186 L A 0.0000
187 L A 0.0000
188 K A -2.0300
189 T A 0.0000
190 V A -1.6376
191 Q A -2.6393
192 F A 0.0000
193 C A 0.0000
194 D A -3.2589
195 A A -2.5692
196 M A 0.0000
197 R A -3.1033
198 N A -2.5889
199 A A -1.6835
200 G A -1.6247
201 I A 0.0000
202 V A 0.1522
203 G A 0.0000
204 V A 0.8896
205 L A 0.0000
206 T A 0.0000
207 L A 0.0000
208 D A 0.0000
209 N A -0.6504
210 Q A 0.0000
211 D A -1.6512
212 L A 0.0000
213 N A -2.0051
214 G A 0.0000
215 N A -1.5438
216 W A 0.0000
217 Y A 0.1939
218 D A 0.0000
219 F A 0.6322
220 G A -0.2217
221 D A -0.5091
222 F A 0.6251
223 I A 1.3897
224 Q A -0.4254
225 T A -0.4011
226 T A -0.4657
227 P A -0.6320
228 G A -0.7589
229 S A -0.7564
230 G A -0.3574
231 V A -0.2888
232 P A 0.0000
233 V A 0.5820
234 V A 0.0000
235 D A 0.0000
236 S A 0.1477
237 Y A 0.0000
238 Y A 0.0000
239 S A 0.0000
240 L A 0.0000
241 L A 0.0000
242 M A 0.0000
243 P A 0.0000
244 I A 0.0000
245 L A 0.0000
246 T A 0.0000
247 L A 0.1279
248 T A 0.0000
249 R A -0.7865
250 A A 0.0000
251 L A 0.0000
252 T A -0.2336
253 A A 0.0000
254 E A 0.0000
255 S A 0.0000
256 H A -0.3788
257 V A -0.3437
258 D A -1.1533
259 T A -1.0443
260 D A -1.3100
261 L A 0.2380
262 T A -0.4332
263 K A -1.0917
264 P A -0.8729
265 Y A -0.1608
266 I A -0.0157
267 K A -0.6434
268 W A 0.0000
269 D A -1.3947
270 L A -0.5824
271 L A -0.1300
272 K A -0.7934
273 Y A 0.0000
274 D A -1.3115
275 F A 0.2601
276 T A -0.9687
277 E A -1.9776
278 E A -1.4677
279 R A 0.0000
280 L A -0.9716
281 K A -2.3219
282 L A 0.0000
283 F A 0.0000
284 D A -2.3380
285 R A -2.2682
286 Y A 0.0000
287 F A 0.0000
288 K A -1.8977
289 Y A -1.0026
290 W A -1.2497
291 D A -2.3069
292 Q A -2.1331
293 T A 0.0000
294 Y A 0.0000
295 H A -1.1756
296 P A -0.6864
297 N A -0.5540
298 C A -0.3935
299 V A -0.2699
300 N A -0.7617
301 C A -0.3386
302 L A 0.4438
303 D A -1.5030
304 D A -1.6105
305 R A -2.2321
306 C A -1.2109
307 I A 0.0000
308 L A 0.0000
309 H A 0.0000
310 C A 0.0000
311 A A 0.0000
312 N A 0.0000
313 F A 0.0000
314 N A 0.0000
315 V A 0.0000
316 L A 0.0000
317 F A 0.0000
318 S A 0.0000
319 T A 0.0000
320 V A 0.0000
321 F A 0.1817
322 P A -0.1557
323 P A 0.0000
324 T A 0.0000
325 S A 0.0000
326 F A 0.0000
327 G A 0.0000
328 P A 0.0000
329 L A 0.0000
330 V A 0.0000
331 R A 0.0000
332 K A -0.7927
333 I A 0.4613
334 F A 1.3089
335 V A -0.4268
336 D A -1.5724
337 G A -0.8413
338 V A 0.0662
339 P A -0.0184
340 F A 0.8466
341 V A 0.0000
342 V A 0.0000
343 S A 0.0000
344 T A 0.0000
345 G A -0.5184
346 Y A 0.0000
347 H A 0.0000
348 F A 0.0000
349 R A 0.0000
350 E A 0.0000
351 L A 0.0000
352 G A 0.0000
353 V A 0.3886
354 V A -0.1131
355 H A -0.8327
356 N A -1.4705
357 Q A -2.6871
358 D A -2.1751
359 V A -0.3811
360 N A -0.1674
361 L A 0.7694
362 H A -0.7257
363 S A -1.1148
364 S A -1.0620
365 R A -1.3884
366 L A 0.4860
367 S A 0.0989
368 F A 0.0854
369 K A -0.1125
370 E A -0.3414
371 L A 0.0000
372 L A 0.0000
373 V A 0.0000
374 Y A 0.0007
375 A A 0.0000
376 A A 0.0000
377 D A 0.0000
378 P A 0.0000
379 A A 0.0000
380 M A 0.0000
381 H A -0.0788
382 A A 0.0000
383 A A 0.0000
384 S A 0.0000
385 G A -0.7321
386 N A -0.2394
387 L A 0.5679
388 L A 0.0000
389 L A 1.4530
390 D A 0.0000
391 K A -1.6154
392 R A -1.4513
393 T A 0.0000
394 T A -0.1202
395 C A 0.0000
396 F A 1.9454
397 S A 1.2260
398 V A 0.0000
399 A A 0.0000
400 A A 0.0000
401 L A 1.2174
402 T A 0.5016
403 N A -0.0587
404 N A 0.2517
405 V A 1.0515
406 A A 0.3528
407 F A 0.4081
408 Q A -0.7113
409 T A -1.0284
410 V A 0.0000
411 K A -2.3615
412 P A -1.2313
413 G A -0.9861
414 N A -0.4185
415 F A 0.0000
416 N A 0.0000
417 K A 0.0000
418 D A -0.9757
419 F A 0.0000
420 Y A 0.0000
421 D A -1.5464
422 F A -0.8075
423 A A 0.0000
424 V A -0.0265
425 S A -0.5218
426 K A -1.4333
427 G A -1.1497
428 F A 0.0000
429 F A 0.0000
430 K A -2.1486
431 E A -2.0255
432 G A -1.4404
433 S A -1.3299
434 S A -1.2234
435 V A 0.0000
436 E A -1.0881
437 L A 0.0000
438 K A -0.1925
439 H A 0.0000
440 F A 0.7366
441 F A 0.0000
442 F A 0.0000
443 A A 0.0000
444 Q A -0.9708
445 D A -0.9150
446 G A -0.4818
447 N A -0.4961
448 A A 0.0000
449 A A -0.4316
450 I A -0.3142
451 S A -0.6237
452 D A -0.6687
453 Y A -0.3964
454 D A -1.2369
455 Y A 0.3087
456 Y A -0.1103
457 R A -0.5670
458 Y A 0.0152
459 N A -0.0813
460 L A 0.0000
461 P A 0.0000
462 T A 0.0000
463 M A 0.0000
464 C A 0.0000
465 D A 0.0000
466 I A 0.0000
467 R A 0.0000
468 Q A 0.0000
469 L A 0.0000
470 L A 0.0000
471 F A 0.0000
472 V A 0.0000
473 V A 0.0000
474 E A -0.9976
475 V A 0.0000
476 V A 0.0000
477 D A 0.0000
478 K A -1.4096
479 Y A 0.0000
480 F A 0.0000
481 D A -1.8690
482 C A -0.4058
483 Y A 0.3618
484 D A -0.6528
485 G A -0.2837
486 G A -0.1739
487 C A 0.0000
488 I A 0.3902
489 N A -0.2783
490 A A 0.0000
491 N A -1.0547
492 Q A -0.4389
493 V A 0.0000
494 I A 0.0590
495 V A 1.0141
496 N A -0.2313
497 N A -0.4801
498 L A -0.2378
499 D A -1.7873
500 K A -1.9402
501 S A -2.3320
502 A A 0.0000
503 G A 0.0000
504 F A 0.0000
505 P A -0.6879
506 F A 0.0000
507 N A -2.6813
508 K A -2.5954
509 W A -1.6903
510 G A 0.0000
511 K A -3.3036
512 A A 0.0000
513 R A -2.6303
514 L A -1.6275
515 Y A 0.0000
516 Y A 0.0000
517 D A -2.1012
518 S A 0.0000
519 M A 0.0000
520 S A -1.2695
521 Y A -0.7913
522 E A -2.2215
523 D A -1.4524
524 Q A 0.0000
525 D A -1.2461
526 A A -0.4443
527 L A 0.0000
528 F A 0.0000
529 A A 0.3523
530 Y A 0.6086
531 T A 0.0000
532 K A -0.8293
533 R A -0.5294
534 N A -0.8176
535 V A 0.0000
536 I A 0.0000
537 P A 0.0000
538 T A 0.0000
539 I A 0.0000
540 T A 0.0000
541 Q A -0.3781
542 M A -0.5579
543 N A -1.0518
544 L A -1.3245
545 K A -2.1281
546 Y A 0.0000
547 A A -0.5393
548 I A -0.2812
549 S A -0.5340
550 A A 0.0000
551 K A -1.6435
552 N A -1.9155
553 R A -1.7886
554 A A -1.7857
555 R A -2.3214
556 T A -1.1175
557 V A -0.4206
558 A A -0.4199
559 G A 0.0000
560 V A 0.0000
561 S A 0.0000
562 I A 0.0000
563 C A 0.0000
564 S A 0.0000
565 T A 0.0000
566 M A 0.0000
567 T A 0.0000
568 N A 0.0000
569 R A 0.0000
570 Q A 0.0000
571 F A 0.0000
572 H A 0.0000
573 Q A 0.0000
574 K A -0.9023
575 L A 0.0000
576 L A -0.6736
577 K A -1.6993
578 S A -0.7398
579 I A 0.0000
580 A A -0.6966
581 A A -0.6429
582 T A 0.0000
583 R A -2.0786
584 G A -1.5320
585 A A 0.0000
586 T A 0.0000
587 V A 0.0000
588 V A 0.0000
589 I A -0.0671
590 G A -0.3748
591 T A -0.3199
592 S A 0.0000
593 K A -0.5821
594 F A 0.7505
595 Y A 0.2183
596 G A -0.3882
597 G A -0.8106
598 W A 0.0000
599 H A -1.4756
600 N A -1.8962
601 M A -1.0192
602 L A -1.0457
603 K A -2.2435
604 T A -1.1541
605 V A 0.0000
606 Y A -0.6152
607 S A -1.2810
608 D A -1.7205
609 V A -1.5805
610 E A -2.3566
611 N A -2.0177
612 P A -1.7101
613 H A -1.4511
614 L A 0.0000
615 M A 0.0000
616 G A 0.0000
617 W A 0.0000
618 D A -1.0236
619 Y A 0.0000
620 P A -1.1592
621 K A -1.1676
622 C A -0.6098
623 D A -0.4894
624 R A -0.3973
625 A A -0.1511
626 M A 0.0000
627 P A 0.0000
628 N A 0.0000
629 M A 0.0000
630 L A 0.0000
631 R A -0.2030
632 I A 0.0000
633 M A 0.0000
634 A A 0.0000
635 S A 0.0000
636 L A 0.0000
637 V A 0.0000
638 L A 0.0000
639 A A 0.0000
640 R A -0.9465
641 K A 0.0000
642 H A 0.0000
643 T A -0.0247
644 T A 0.0376
645 C A 0.5961
646 C A 0.6136
647 S A 0.6721
648 L A 0.8828
649 S A 0.1451
650 H A 0.1830
651 R A 0.1736
652 F A 0.0000
653 Y A -0.0367
654 R A 0.0000
655 L A 0.0000
656 A A 0.0000
657 N A 0.0000
658 E A 0.0000
659 C A 0.0000
660 A A 0.0000
661 Q A 0.0000
662 V A 0.1248
663 L A 0.0000
664 S A 0.0000
665 E A 0.0000
666 M A 0.0000
667 V A 0.0000
668 M A 0.0520
669 C A -0.1808
670 G A 0.0476
671 G A 0.0000
672 S A 0.3683
673 L A 0.0000
674 Y A 0.0000
675 V A 0.0000
676 K A 0.0000
677 P A 0.0000
678 G A -0.1857
679 G A 0.0000
680 T A -0.0364
681 S A 0.0000
682 S A -0.0773
683 G A 0.0000
684 D A 0.0000
685 A A -0.0491
686 T A 0.0000
687 T A -0.0410
688 A A -0.0310
689 Y A 0.0000
690 A A 0.0000
691 N A 0.0000
692 S A 0.0000
693 V A 0.0000
694 F A 0.0000
695 N A 0.0000
696 I A 0.0000
697 C A 0.0000
698 Q A 0.0000
699 A A 0.0000
700 V A 0.0000
701 T A 0.0000
702 A A 0.0000
703 N A 0.0000
704 V A 0.0000
705 N A 0.0000
706 A A 0.0000
707 L A 0.0000
708 L A 0.0000
709 S A 0.0000
710 T A 0.0000
711 D A -1.5426
712 G A -1.0272
713 N A -1.3763
714 K A -2.9026
715 I A 0.0000
716 A A -2.0117
717 D A -2.4226
718 K A -2.7840
719 Y A -0.4350
720 V A 0.0000
721 R A -2.3415
722 N A -1.8689
723 L A 0.0000
724 Q A 0.0000
725 H A -1.8034
726 R A -1.9535
727 L A 0.0000
728 Y A 0.0000
729 E A -1.7678
730 C A 0.0000
731 L A 0.0000
732 Y A -0.4647
733 R A 0.0000
734 N A -2.0593
735 R A 0.0000
736 D A -2.6352
737 V A 0.0000
738 D A -2.6216
739 T A -2.1483
740 D A -2.6641
741 F A 0.0000
742 V A 0.0000
743 N A -1.9400
744 E A -1.3331
745 F A 0.0000
746 Y A 0.0000
747 A A -0.8321
748 Y A -0.7610
749 L A 0.0000
750 R A -1.2908
751 K A -2.2342
752 H A 0.0000
753 F A 0.0000
754 S A 0.0000
755 M A 0.0000
756 M A 0.0000
757 I A 0.0000
758 L A 0.0000
759 S A -0.3110
760 D A -0.5808
761 D A 0.0000
762 A A -0.1682
763 V A 0.0000
764 V A 0.0000
765 C A 0.0000
766 F A 0.0000
767 N A -1.1581
768 S A -0.9952
769 T A -0.8315
770 Y A 0.0000
771 A A -0.5359
772 S A -0.8045
773 Q A -1.6603
774 G A -1.1936
775 L A 0.0000
776 V A 0.0788
777 A A 0.0603
778 S A 0.0000
779 I A 1.1285
780 K A -0.3049
781 N A 0.0000
782 F A 0.4047
783 K A -0.0038
784 S A 0.0000
785 V A 0.0000
786 L A 0.0000
787 Y A 0.2144
788 Y A 0.1979
789 Q A 0.0000
790 N A 0.0000
791 N A 0.0000
792 V A 0.0000
793 F A 0.0000
794 M A -0.5392
795 S A -0.9684
796 E A -1.3117
797 A A -1.2896
798 K A -1.6798
799 C A -0.2747
800 W A 0.1680
801 T A -0.0150
802 E A -0.8769
803 T A -1.3871
804 D A -2.4066
805 L A 0.0000
806 T A -0.8725
807 K A -0.7651
808 G A -0.4016
809 P A -0.5693
810 H A 0.0000
811 E A -0.7490
812 F A 0.0000
813 C A -0.5981
814 S A -0.6285
815 Q A 0.0000
816 H A -1.2633
817 T A 0.0000
818 M A -0.0646
819 L A 0.0553
820 V A -0.1061
821 K A -2.4379
822 Q A -2.8945
823 G A -2.7261
824 D A -3.6119
825 D A -3.4140
826 Y A 0.0000
827 V A -0.7238
828 Y A 0.0000
829 L A 0.0000
830 P A 0.0000
831 Y A 0.0000
832 P A 0.0000
833 D A -0.9874
834 P A 0.0000
835 S A -1.0271
836 R A -1.6659
837 I A 0.0000
838 L A 0.0000
839 G A -0.5028
840 A A -0.1192
841 G A 0.0000
842 C A 0.0000
843 F A 0.6103
844 V A 0.0987
845 D A 0.0000
846 D A -0.6533
847 I A -0.4980
848 V A 0.0000
849 K A -0.8011
850 T A 0.0000
851 D A -0.7920
852 G A 0.0000
853 T A 0.0000
854 L A -0.7240
855 M A 0.0000
856 I A 0.0000
857 E A -2.0247
858 R A -2.1634
859 F A 0.0000
860 V A -0.6524
861 S A -0.5296
862 L A -0.2663
863 A A 0.0000
864 I A 0.0000
865 D A 0.1864
866 A A 0.0000
867 Y A 0.0000
868 P A 0.0000
869 L A 0.0000
870 T A -1.1497
871 K A -1.4413
872 H A -1.4737
873 P A -1.5943
874 N A -2.1681
875 Q A -1.9936
876 E A 0.0000
877 Y A -1.1759
878 A A -1.2528
879 D A 0.0000
880 V A 0.0000
881 F A -0.1883
882 H A -0.8106
883 L A 0.0000
884 Y A 0.0000
885 L A -0.8356
886 Q A -1.3100
887 Y A 0.0000
888 I A 0.0000
889 R A -3.0132
890 K A -2.6872
891 L A 0.0000
892 H A -2.1489
893 D A -2.8454
894 E A -2.0757
895 L A 0.0000
896 T A -0.6366
897 G A -0.7170
898 H A -0.8573
899 M A 0.0000
900 L A 1.3204
901 D A -0.3600
902 M A 1.3462
903 Y A 2.1446
904 S A 1.9246
905 V A 2.5567
906 M A 0.9992
907 L A -0.1022
908 T A -1.4743
909 N A -2.3874
910 D A -3.1624
911 N A -2.6571
912 T A 0.0000
913 S A -2.1246
914 R A -2.4721
915 Y A 0.0000
916 W A -1.5291
917 E A -2.3319
918 P A -1.6837
919 E A -2.0993
920 F A -0.8677
921 Y A 0.0000
922 E A -1.7462
923 A A -0.5543
924 M A 0.1923
925 Y A 0.0000
926 T A -0.2789
927 P A -0.6403
928 H A -0.7535
929 T A -0.7033
6 F B 2.1660
7 S B 1.3075
8 S B 1.1380
9 L B 2.0590
10 P B 1.2510
11 S B 0.0000
12 Y B 1.5751
13 A B 1.0706
14 A B 0.3562
15 F B 0.1468
16 A B -0.2922
17 T B -0.6459
18 A B -1.2889
19 Q B -2.1700
20 E B -2.8643
21 A B -1.6874
22 Y B -1.9081
23 E B -2.7587
24 Q B -2.5354
25 A B -1.2526
26 V B -0.3928
27 A B -1.0080
28 N B -1.7450
29 G B -1.4742
30 D B -1.0002
31 S B -1.0578
32 E B -1.4695
33 V B -0.0680
34 V B -0.5457
35 L B -1.5005
36 K B -2.9479
37 K B -2.8608
38 L B -1.9537
39 K B -3.0979
40 K B -3.3878
41 S B -1.8871
42 L B -1.8072
43 N B -2.5183
44 V B -0.3341
45 A B -1.0278
46 K B -2.5217
47 S B -1.9627
48 E B -1.3651
49 F B -0.7535
50 D B -2.8538
51 R B -2.6191
52 D B 0.0000
53 A B -1.1995
54 A B -1.3437
55 M B -0.3877
56 Q B -1.6574
57 R B -3.0454
58 K B -2.5868
59 L B -1.1992
60 E B -3.4181
61 K B -3.5002
62 M B -1.2943
63 A B -1.6249
64 D B -2.7397
65 Q B -2.2949
66 A B -0.8364
67 M B 0.5224
68 T B -0.9228
69 Q B -1.7466
70 M B 0.0268
71 Y B -0.4425
72 K B -2.8401
73 Q B -2.9463
74 A B -2.5286
75 R B -3.7843
76 S B -3.2999
77 E B -3.8227
78 D B -3.6364
79 K B -2.7929
80 R B -2.3382
81 A B -1.8841
82 K B -1.7347
83 V B 0.0000
84 T B -0.9279
85 S B -0.9800
86 A B -0.4509
87 M B 0.0000
88 Q B -0.6659
89 T B 0.1536
90 M B 0.1343
91 L B 0.3990
92 F B 1.0514
93 T B -0.3126
94 M B 0.0000
95 L B 0.0000
96 R B -2.4358
97 K B -2.8237
98 L B 0.0000
99 D B -3.1641
100 N B 0.0000
101 D B -2.4700
102 A B -1.6390
103 L B 0.0000
104 N B 0.0000
105 N B -2.4536
106 I B -1.6793
107 I B 0.0000
108 N B -3.2816
109 N B -2.9084
110 A B -2.3410
111 R B -3.4863
112 D B -3.6613
113 G B -2.3682
114 C B 0.0000
115 V B 0.0000
116 P B 0.0000
117 L B 0.0000
118 N B 0.3647
119 I B 0.5593
120 I B 0.0000
121 P B 0.0000
122 L B 0.7510
123 T B 0.3395
124 T B -0.5983
125 A B 0.0000
126 A B -0.7754
127 K B -0.9446
128 L B -0.0650
129 M B 0.0000
130 V B 0.0000
131 V B 0.0000
132 I B 0.0000
133 P B -1.1218
134 D B -1.7473
135 Y B -1.3961
136 N B -2.2528
137 T B 0.0000
138 Y B 0.0000
139 K B -3.1642
140 N B -3.1943
141 T B -2.2821
142 C B -1.0249
143 D B -1.6418
144 G B -1.0330
145 T B -0.7102
146 T B -0.2175
147 F B 0.7303
148 T B 0.8797
149 Y B 1.3087
150 A B 0.7853
151 S B 0.4193
152 A B 0.6767
153 L B 1.1951
154 W B 0.0000
155 E B -1.4092
156 I B -1.3445
157 Q B -1.9215
158 Q B -1.2866
159 V B -0.1201
160 V B 0.4403
161 D B 0.0000
162 A B -0.1312
163 D B -1.1371
164 S B -0.3078
165 K B 0.2581
166 I B 1.8082
167 V B 1.2068
168 Q B -0.8151
169 L B 0.0000
170 S B -1.8955
171 E B -2.8433
172 I B -1.4747
173 S B -1.2517
174 M B -1.2177
175 D B -1.8062
176 N B 0.0000
177 S B -1.0970
178 P B -1.4088
179 N B -1.4326
180 L B -0.0277
181 A B -0.1897
182 W B 0.0000
183 P B 0.0426
184 L B 0.0000
185 I B 0.0000
186 V B 0.0000
187 T B -0.6766
188 A B 0.0000
189 L B -0.7387
190 R B -1.2564
191 A B -0.4346
1 S C -1.7837
2 K C -2.0699
3 M C -1.5656
4 S C 0.0000
5 D C 0.0000
6 V C 0.0000
7 K C 0.0000
8 C C 0.0000
9 T C 0.0000
10 S C 0.0000
11 V C 0.0000
12 V C 0.0000
13 L C 0.0000
14 L C 0.0000
15 S C 0.0000
16 V C 0.0000
17 L C 0.0000
18 Q C 0.0000
19 Q C -1.4715
20 L C -0.3838
21 R C -1.8736
22 V C -0.8046
23 E C -0.8280
24 S C -0.7235
25 S C 0.0000
26 S C -0.8001
27 K C -0.7650
28 L C -0.6070
29 W C 0.0000
30 A C -0.4868
31 Q C -0.6722
32 C C 0.0000
33 V C 0.0000
34 Q C -1.2287
35 L C -0.3030
36 H C 0.0000
37 N C 0.0000
38 D C -0.9876
39 I C 0.0000
40 L C 0.0000
41 L C 0.2715
42 A C -1.1742
43 K C -2.2982
44 D C -2.6360
45 T C -1.9891
46 T C -1.3377
47 E C -1.5864
48 A C 0.0000
49 F C -0.9249
50 E C -0.4958
51 K C -0.4832
52 M C 0.0000
53 V C 0.0000
54 S C 0.0000
55 L C 0.0000
56 L C 0.0000
57 S C 0.0000
58 V C 0.2678
59 L C 0.0000
60 L C 0.0000
61 S C 0.0584
62 M C -0.4745
63 Q C -1.1469
64 G C -1.0309
65 A C 0.0000
66 V C 0.0000
67 D C -1.4745
68 I C -1.4326
69 N C -1.9195
70 K C -1.6523
71 L C 0.0000
72 C C -0.5538
73 E C 0.0000
6 F D 1.7795
7 S D 1.2930
8 S D 1.3136
9 L D 1.9822
10 P D 1.0823
11 S D 0.0000
12 Y D 1.6418
13 A D 1.1208
14 A D 0.4809
15 F D 0.4778
16 A D 0.1131
17 T D -0.6999
18 A D -1.4008
19 Q D -1.9677
20 E D -2.6743
21 A D -1.5964
22 Y D -1.3986
23 E D -2.4110
24 Q D -2.3653
25 A D 0.0000
26 V D -0.1132
27 A D -1.0015
28 N D -1.7129
29 G D -1.4051
30 D D -1.2457
31 S D -1.0683
32 E D -1.4045
33 V D -0.0049
34 V D -0.4345
35 L D -1.2330
36 K D -2.6032
37 K D -2.7430
38 L D -1.9254
39 K D -2.7616
40 K D -3.2849
41 S D -1.8332
42 L D -1.8449
43 N D -2.2783
44 V D -0.7209
45 A D -1.1954
46 K D -2.3856
47 S D -2.2747
48 E D -2.3804
49 F D -1.6157
50 D D -3.1339
51 R D -3.3579
52 D D -2.2694
53 A D -1.8928
54 A D -1.7506
55 M D -1.2865
56 Q D -1.7919
57 R D -3.2788
58 K D -2.6043
59 L D -1.1010
60 E D -2.5738
61 K D -3.0970
62 M D -0.9614
63 A D -1.0907
64 D D 0.0000
65 Q D -1.6806
66 A D -0.6970
67 M D -0.0610
68 T D -0.6585
69 Q D -1.4266
70 M D -0.3047
71 Y D 0.0305
72 K D -1.1226
73 Q D -1.8576
74 A D -1.6261
75 R D -2.1054
76 S D -2.6689
77 E D -3.7398
78 D D -3.5722
79 K D -3.2234
80 R D -3.5438
81 A D -2.6316
82 K D -2.8969
83 V D -1.4385
84 T D -0.8259
85 S D -0.7062
86 A D -0.3974
87 M D 0.0000
88 Q D -0.2920
89 T D -0.1431
90 M D -0.1161
91 L D 0.0000
92 F D -0.5661
93 T D -1.0785
94 M D 0.0000
95 L D 0.0000
96 R D -3.1428
97 K D -2.8731
98 L D 0.0000
99 D D -3.8755
100 N D 0.0000
101 D D -2.7298
102 A D 0.0000
103 L D 0.0000
104 N D -2.4703
105 N D -2.0440
106 I D 0.0000
107 I D 0.0000
108 N D -1.8859
109 N D -1.4184
110 A D 0.0000
111 R D -2.5867
112 D D -1.9336
113 G D 0.0000
114 C D 0.0000
115 V D 0.0947
116 P D 0.0000
117 L D 1.1628
118 N D 0.0441
119 I D 0.0000
120 I D 0.0548
121 P D 0.0000
122 L D 0.0000
123 T D -0.1422
124 T D -0.2961
125 A D -0.4158
126 A D -0.8101
127 K D -1.7380
128 L D 0.0000
129 M D 0.4085
130 V D 0.0000
131 V D 0.6860
132 I D 0.0000
133 P D 0.0000
134 D D -1.9850
135 Y D -2.0532
136 N D -2.6481
137 T D -2.0080
138 Y D 0.0000
139 K D -3.8118
140 N D -2.7934
141 T D -1.8347
142 C D 0.0000
143 D D -3.0407
144 G D -2.3326
145 T D -1.7758
146 T D -1.3102
147 F D 0.0000
148 T D -0.3804
149 Y D 0.0000
150 A D -0.3905
151 S D -0.2089
152 A D 0.4352
153 L D 1.0324
154 W D 0.0000
155 E D -1.4830
156 I D 0.0000
157 Q D -2.0033
158 Q D -1.4501
159 V D -0.1127
160 V D 0.0000
161 D D -1.3205
162 A D -1.4352
163 D D -2.4515
164 S D -1.9180
165 K D -2.3786
166 I D -0.5716
167 V D 0.0000
168 Q D -1.1535
169 L D 0.0000
170 S D -2.0695
171 E D -2.7877
172 I D 0.0000
173 S D -2.8393
174 M D 0.0000
175 D D -3.2240
176 N D -2.6703
177 S D -1.8811
178 P D -1.6894
179 N D -1.9391
180 L D -1.0373
181 A D -0.2565
182 W D 0.5162
183 P D -0.4351
184 L D 0.0000
185 I D 0.7471
186 V D 0.0000
187 T D -0.5799
188 A D 0.0000
189 L D -0.8321
190 R D -1.0980
191 A D -0.2065
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CABS-flex predictions of flexibility of input structure

In dynamic mode, A3D analysis is performed on the set of models reflecting fluctuations of the input structure (predicted by CABS-flex method, models are numbered from 0 to 11) and the input model. Their A3D scores are provided below in the table.
The right panel presents comparison of the most aggregation prone model (with the highest A3D score, -0.6422 in this case) with the input model (the most aggregation prone model in blue, input in red) and RMSF plot which shows the extent of residue fluctuations in Angstroms (predicted by CABS-flex).

Model
Average A3D Score
model_6 -0.6422 View CSV PDB
model_4 -0.6427 View CSV PDB
model_2 -0.6599 View CSV PDB
model_1 -0.6664 View CSV PDB
model_7 -0.6793 View CSV PDB
model_11 -0.6794 View CSV PDB
model_3 -0.6904 View CSV PDB
model_0 -0.6933 View CSV PDB
model_9 -0.6945 View CSV PDB
model_8 -0.6988 View CSV PDB
model_5 -0.7098 View CSV PDB
model_10 -0.7185 View CSV PDB
input -0.8522 View CSV PDB
 

Laboratory of Theory of Biopolymers 2018