Project name: ucht1

Status: done

Started: 2024-04-19 18:27:52
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Chain sequence(s) A: EVQLQQSGPELVKPGASMKISCKASGYSFTGYTMNWVKQSHGKNLEWMGLINPYKGVSTYNQKFKDKATLTVDKSSSTAYMELLSLTSEDSAVYYCARSGYYGDSDWYFDVWGQGTTLTVF
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.5521
Maximal score value
1.644
Average score
-0.5635
Total score value
-68.1788

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.9860
2 V A -1.1393
3 Q A -1.5976
4 L A 0.0000
5 Q A -1.7972
6 Q A 0.0000
7 S A -1.2781
8 G A -1.2487
9 P A -0.8839
10 E A -1.1793
11 L A 0.8478
12 V A 0.0752
13 K A -0.9122
14 P A -0.7361
15 G A -0.9709
16 A A -0.7231
17 S A -0.8002
18 M A 0.0000
19 K A -2.0266
20 I A 0.0000
21 S A -0.8971
22 C A 0.0000
23 K A -1.5413
24 A A 0.0000
25 S A -1.1466
26 G A -1.0921
27 Y A -0.4001
28 S A -0.0165
29 F A 0.0000
30 T A 0.0707
31 G A 0.7385
32 Y A 0.7307
33 T A 0.6150
34 M A 0.0000
35 N A 0.0000
36 W A 0.0000
37 V A 0.0000
38 K A -0.7392
39 Q A -1.3224
40 S A -1.9209
41 H A -2.1194
42 G A -1.9965
43 K A -2.9123
44 N A -2.2239
45 L A -0.7163
46 E A -1.3503
47 W A -0.2999
48 M A 0.0000
49 G A 0.0000
50 L A 0.5153
51 I A 0.0000
52 N A 0.2369
53 P A 0.0000
54 Y A 0.3727
55 K A -0.8497
56 G A -0.5008
57 V A 0.7489
58 S A 0.3513
59 T A -0.0559
60 Y A -1.1791
61 N A -1.9403
62 Q A -3.0066
63 K A -3.2433
64 F A 0.0000
65 K A -3.5521
66 D A -3.1613
67 K A -2.0108
68 A A 0.0000
69 T A -0.9722
70 L A 0.0000
71 T A -0.1398
72 V A -0.6292
73 D A -1.6349
74 K A -1.9625
75 S A -1.2849
76 S A -1.1302
77 S A -1.2473
78 T A 0.0000
79 A A 0.0000
80 Y A -0.5442
81 M A 0.0000
82 E A -1.1795
83 L A 0.0000
84 L A -0.3288
85 S A -0.5994
86 L A 0.0000
87 T A -0.8204
88 S A -0.8797
89 E A -2.0583
90 D A 0.0000
91 S A -0.5431
92 A A 0.0000
93 V A -0.0784
94 Y A 0.0000
95 Y A 0.1408
96 C A 0.0000
97 A A 0.0000
98 R A 0.0000
99 S A 0.5077
100 G A 0.2064
101 Y A 0.6749
102 Y A 0.2786
103 G A -0.9308
104 D A -1.5997
105 S A -0.7733
106 D A -0.2341
107 W A 1.0593
108 Y A 1.3194
109 F A 0.7781
110 D A -0.4682
111 V A -0.1306
112 W A -0.0933
113 G A 0.0000
114 Q A -1.3688
115 G A -0.7058
116 T A 0.0000
117 T A -0.4493
118 L A 0.0000
119 T A 0.1696
120 V A 0.0000
121 F A 1.6440
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Laboratory of Theory of Biopolymers 2018