Project name: SAP4

Status: done

Started: 2023-09-26 23:35:10
Settings
Chain sequence(s) A: MFGFFILTIFCITGFVTSINQPELEFGYKDVACNLLELAQEKSLQIMKEEQFIGNMVEYLVSITCDNVKDLNKRLQCKTSMATEARILVQYFIEFIESYRLKTMLNWCQSTLERPQYGNSSFLCSTCEMAVAYLKTFSKSEEAKAIVHQAVDKICSLTGSFEVQCSFLGGMFIDKYIDTISTMDPDSACMTMHMCS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:39)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:02:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:41)
Show buried residues

Minimal score value
-3.3298
Maximal score value
1.8437
Average score
-0.752
Total score value
-147.3875

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1176
2 F A 0.0000
3 G A 0.0000
4 F A 0.0000
5 F A 0.0000
6 I A 0.0000
7 L A 0.0000
8 T A 0.0000
9 I A 0.0000
10 F A 0.8441
11 C A 0.0000
12 I A 0.5196
13 T A 0.5102
14 G A 0.3091
15 F A 0.7300
16 V A 0.3838
17 T A -0.1969
18 S A -0.2749
19 I A -0.4599
20 N A -1.7336
21 Q A -2.1486
22 P A -1.9829
23 E A -2.3939
24 L A -1.0533
25 E A -1.3749
26 F A 0.5443
27 G A -0.0717
28 Y A -0.0776
29 K A -0.7862
30 D A -1.5517
31 V A -0.1633
32 A A 0.0000
33 C A 0.0000
34 N A -1.0399
35 L A -0.2206
36 L A 0.0000
37 E A -1.0284
38 L A -0.8289
39 A A 0.0000
40 Q A 0.0000
41 E A -2.4273
42 K A -1.6982
43 S A 0.0000
44 L A -2.0576
45 Q A -2.4271
46 I A -1.6168
47 M A 0.0000
48 K A -3.0330
49 E A -3.2233
50 E A -3.3298
51 Q A -2.8234
52 F A -2.1114
53 I A -2.0604
54 G A -2.2755
55 N A -2.3283
56 M A 0.0000
57 V A 0.0000
58 E A -2.1070
59 Y A -0.6993
60 L A 0.0000
61 V A 0.0000
62 S A -0.5580
63 I A 0.6138
64 T A -0.1862
65 C A 0.0000
66 D A -1.6670
67 N A -2.1706
68 V A -2.1545
69 K A -2.7212
70 D A -2.1759
71 L A -0.5516
72 N A -1.8935
73 K A -2.7114
74 R A -2.1685
75 L A -0.5418
76 Q A -1.7503
77 C A -1.2091
78 K A -1.4792
79 T A -0.9035
80 S A -0.8674
81 M A -0.9250
82 A A -1.1924
83 T A -0.9014
84 E A -1.5660
85 A A 0.0000
86 R A -0.8220
87 I A 0.7991
88 L A 0.1814
89 V A 0.0000
90 Q A -0.4281
91 Y A 0.4536
92 F A 0.0000
93 I A 0.0000
94 E A -2.2141
95 F A 0.0000
96 I A 0.0000
97 E A -2.3805
98 S A -1.2680
99 Y A -0.4537
100 R A -1.4783
101 L A 0.0000
102 K A -1.6076
103 T A -0.8434
104 M A -0.3623
105 L A 0.0000
106 N A -1.5396
107 W A -1.1129
108 C A 0.0000
109 Q A -1.8309
110 S A -1.2497
111 T A -0.7749
112 L A -0.4689
113 E A -2.2915
114 R A -2.4988
115 P A -2.0094
116 Q A -1.9434
117 Y A -0.2258
118 G A -0.7417
119 N A -0.9995
120 S A -0.4113
121 S A -0.1211
122 F A 0.6408
123 L A 0.4698
124 C A -0.1557
125 S A -0.1878
126 T A 0.2881
127 C A 0.0000
128 E A -1.0123
129 M A 0.0839
130 A A 0.1806
131 V A 0.0000
132 A A -0.3139
133 Y A 0.5655
134 L A 0.0000
135 K A -1.1105
136 T A -0.5687
137 F A -0.8964
138 S A 0.0000
139 K A -2.7635
140 S A -2.4383
141 E A -3.0011
142 E A -2.6140
143 A A 0.0000
144 K A -1.7290
145 A A -0.9030
146 I A 0.2111
147 V A 0.0000
148 H A -1.1980
149 Q A -1.8073
150 A A -1.3281
151 V A 0.0000
152 D A -2.1897
153 K A -2.6660
154 I A 0.0000
155 C A 0.0000
156 S A -0.6682
157 L A 0.6106
158 T A 0.1717
159 G A -0.1525
160 S A -0.1800
161 F A 0.2440
162 E A -0.4039
163 V A 1.2957
164 Q A 0.9909
165 C A 0.0000
166 S A 0.1247
167 F A 1.8437
168 L A 0.0000
169 G A 0.0000
170 G A -0.3278
171 M A 0.0000
172 F A 0.0000
173 I A 0.0000
174 D A -1.9201
175 K A -1.6981
176 Y A 0.0000
177 I A 0.0000
178 D A -2.5749
179 T A -1.4285
180 I A 0.0000
181 S A -1.4243
182 T A -0.9039
183 M A -1.2092
184 D A -2.2058
185 P A -1.6214
186 D A -1.8646
187 S A -1.2714
188 A A 0.0000
189 C A 0.0000
190 M A -0.3622
191 T A -0.3499
192 M A 0.0000
193 H A -0.8472
194 M A 0.0000
195 C A -0.3975
196 S A -0.4430
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Laboratory of Theory of Biopolymers 2018