Project name: pg tag

Status: done

Started: 2024-04-30 05:37:44
Settings
Chain sequence(s) A: MIIRPLHDRVKKEVETKSAGGIVLTGSAAAKSTRGVLAV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:18)
Show buried residues

Minimal score value
-2.932
Maximal score value
2.9467
Average score
-0.255
Total score value
-9.9468

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 2.3378
2 I A 2.9467
3 I A 2.5301
4 R A -0.0056
5 P A -0.4233
6 L A 0.0541
7 H A -1.7199
8 D A -2.4517
9 R A -2.5792
10 V A -1.2053
11 K A -2.7575
12 K A -2.9320
13 E A -2.5799
14 V A -1.0335
15 E A -2.0645
16 T A -0.7155
17 K A -0.8868
18 S A -0.2155
19 A A -0.4096
20 G A -0.1260
21 G A 0.2727
22 I A 2.0536
23 V A 1.7296
24 L A 1.0110
25 T A 0.3722
26 G A -0.3326
27 S A -0.8036
28 A A -0.5517
29 A A -0.3759
30 A A -0.7710
31 K A -2.2469
32 S A -1.4447
33 T A -1.7004
34 R A -1.8107
35 G A -0.3765
36 V A 2.0876
37 L A 2.5958
38 A A 2.1312
39 V A 2.4506
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018