Project name: Sm23

Status: done

Started: 2023-09-26 10:09:43
Settings
Chain sequence(s) A: MILKQFFILIVILGVSEVTFGNEENIYSEQLERPQCHLLCGLCRRIGRLIKIFLEDEPFIPLTSRVLYQMCKLIPERHWRNECLDITHYLPRKIHEFADHINVTLECSELGFCHHKHTMLSNSEITSCINDHINYGLSLANSPKYKETIIKNICTHHAADKHKCFETIESIITFLLEITI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:25)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:02:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:26)
Show buried residues

Minimal score value
-3.5668
Maximal score value
3.4791
Average score
-0.6735
Total score value
-121.2298

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.8103
2 I A 2.6596
3 L A 2.6525
4 K A 0.9596
5 Q A 1.4452
6 F A 3.4791
7 F A 3.0358
8 I A 2.0070
9 L A 2.6191
10 I A 3.2493
11 V A 2.3145
12 I A 1.9745
13 L A 0.0000
14 G A 1.1560
15 V A 1.0771
16 S A 0.0000
17 E A 0.0810
18 V A 0.5423
19 T A 0.0000
20 F A -0.5082
21 G A -1.2392
22 N A -2.1238
23 E A -2.0720
24 E A -2.6773
25 N A -1.7284
26 I A 0.0197
27 Y A 0.3342
28 S A -1.1753
29 E A -2.1290
30 Q A -2.3020
31 L A -1.7926
32 E A -3.2015
33 R A -2.5179
34 P A 0.0000
35 Q A -2.0346
36 C A -1.0831
37 H A -0.4726
38 L A 0.0000
39 L A 0.1181
40 C A 0.0000
41 G A 0.0000
42 L A -0.0586
43 C A 0.1099
44 R A -0.5929
45 R A -1.2725
46 I A 0.4532
47 G A -0.3437
48 R A -0.9582
49 L A 0.7584
50 I A 1.3145
51 K A -0.3003
52 I A 0.5849
53 F A 1.1453
54 L A -0.2630
55 E A -2.1697
56 D A -2.2591
57 E A -1.0149
58 P A -0.2762
59 F A 0.8740
60 I A 0.0000
61 P A 0.1249
62 L A 1.4303
63 T A 1.0685
64 S A 0.5456
65 R A -0.3516
66 V A 1.4699
67 L A 1.0121
68 Y A 0.2395
69 Q A -0.1200
70 M A 0.7796
71 C A 0.0000
72 K A -1.0688
73 L A 0.6852
74 I A -0.5525
75 P A -1.1728
76 E A -2.5012
77 R A -3.5668
78 H A -2.6909
79 W A -1.7667
80 R A -2.5794
81 N A -3.3910
82 E A -2.7546
83 C A -1.5057
84 L A -1.4862
85 D A -2.1061
86 I A -0.4873
87 T A 0.0000
88 H A -1.3117
89 Y A -0.5586
90 L A -0.7384
91 P A -0.8222
92 R A -2.3514
93 K A -1.9663
94 I A -1.3298
95 H A -2.5849
96 E A -2.0227
97 F A -0.7950
98 A A 0.0000
99 D A -2.6707
100 H A -1.9135
101 I A 0.0000
102 N A -1.6975
103 V A 0.0000
104 T A -0.6559
105 L A -0.0735
106 E A -0.9760
107 C A 0.0000
108 S A -0.8812
109 E A -1.3128
110 L A 0.4161
111 G A -0.2318
112 F A 0.2404
113 C A 0.0000
114 H A -2.1062
115 H A -2.1442
116 K A -2.4817
117 H A -1.3621
118 T A -0.5126
119 M A -0.0039
120 L A -0.5131
121 S A -1.1397
122 N A -1.8292
123 S A -1.3333
124 E A -1.5659
125 I A -1.2445
126 T A -1.2311
127 S A -1.4567
128 C A 0.0000
129 I A -0.8304
130 N A -2.1588
131 D A -2.9616
132 H A 0.0000
133 I A -0.6498
134 N A -1.9332
135 Y A -1.3352
136 G A -0.6571
137 L A -0.4163
138 S A -0.7320
139 L A 0.0000
140 A A -1.3991
141 N A -1.5323
142 S A -1.6011
143 P A -1.9852
144 K A -2.5952
145 Y A -1.7765
146 K A -2.4267
147 E A -2.9770
148 T A -1.7458
149 I A -0.9658
150 I A 0.0000
151 K A -1.9402
152 N A -1.0559
153 I A -0.5251
154 C A 0.0000
155 T A -1.5628
156 H A -1.5648
157 H A -1.7688
158 A A -1.8368
159 A A -1.7060
160 D A -3.0201
161 K A -3.2151
162 H A -3.1290
163 K A -3.5525
164 C A -2.6597
165 F A -2.5346
166 E A -3.0524
167 T A -1.8634
168 I A 0.0000
169 E A -2.1762
170 S A -0.7872
171 I A 0.0016
172 I A 0.0187
173 T A 0.3540
174 F A 1.3987
175 L A 1.4687
176 L A 1.1283
177 E A 0.5225
178 I A 2.2778
179 T A 1.7343
180 I A 2.1944
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Laboratory of Theory of Biopolymers 2018