| Chain sequence(s) |
A: MTPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRHLAQP
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:03)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:03)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:03)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:03)
[INFO] FoldX: Starting FoldX energy minimalization (00:01:03)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:27)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:02:27)
[INFO] Main: Simulation completed successfully. (00:02:28)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 1.0995 | |
| 2 | T | A | 0.5214 | |
| 3 | P | A | 0.5926 | |
| 4 | L | A | 1.2907 | |
| 5 | G | A | 0.3166 | |
| 6 | P | A | 0.0376 | |
| 7 | A | A | 0.0633 | |
| 8 | S | A | -0.3584 | |
| 9 | S | A | -0.0785 | |
| 10 | L | A | 0.0000 | |
| 11 | P | A | -0.6051 | |
| 12 | Q | A | -1.4881 | |
| 13 | S | A | -0.8745 | |
| 14 | F | A | 0.0000 | |
| 15 | L | A | 0.0000 | |
| 16 | L | A | -0.8081 | |
| 17 | K | A | -1.5953 | |
| 18 | C | A | 0.0000 | |
| 19 | L | A | 0.0000 | |
| 20 | E | A | -2.4556 | |
| 21 | Q | A | -2.3541 | |
| 22 | V | A | 0.0000 | |
| 23 | R | A | -2.9950 | |
| 24 | K | A | -3.0704 | |
| 25 | I | A | 0.0000 | |
| 26 | Q | A | -2.0003 | |
| 27 | G | A | -1.6616 | |
| 28 | D | A | -1.6573 | |
| 29 | G | A | -1.2896 | |
| 30 | A | A | -1.2569 | |
| 31 | A | A | -1.1684 | |
| 32 | L | A | 0.0000 | |
| 33 | Q | A | -1.5287 | |
| 34 | E | A | -2.4013 | |
| 35 | K | A | -2.0815 | |
| 36 | L | A | 0.0000 | |
| 37 | C | A | -1.3936 | |
| 38 | A | A | -1.0542 | |
| 39 | T | A | -1.0304 | |
| 40 | Y | A | -0.6234 | |
| 41 | K | A | -1.7220 | |
| 42 | L | A | -1.2441 | |
| 43 | C | A | -1.4713 | |
| 44 | H | A | -1.9915 | |
| 45 | P | A | -1.3480 | |
| 46 | E | A | -2.1644 | |
| 47 | E | A | -2.1167 | |
| 48 | L | A | 0.0000 | |
| 49 | V | A | 1.0554 | |
| 50 | L | A | 1.6205 | |
| 51 | L | A | 0.8218 | |
| 52 | G | A | 0.5521 | |
| 53 | H | A | -0.4367 | |
| 54 | S | A | -0.0898 | |
| 55 | L | A | -0.1677 | |
| 56 | G | A | -0.5150 | |
| 57 | I | A | 0.0000 | |
| 58 | P | A | 0.3097 | |
| 59 | W | A | 1.0359 | |
| 60 | A | A | 0.0000 | |
| 61 | P | A | 0.1871 | |
| 62 | L | A | 0.0090 | |
| 63 | S | A | -0.3510 | |
| 64 | S | A | -0.4692 | |
| 65 | C | A | 0.0000 | |
| 66 | P | A | -0.7459 | |
| 67 | S | A | -0.7683 | |
| 68 | Q | A | -0.8301 | |
| 69 | A | A | -0.3492 | |
| 70 | L | A | 0.1774 | |
| 71 | Q | A | -0.9799 | |
| 72 | L | A | 0.0000 | |
| 73 | A | A | -0.3550 | |
| 74 | G | A | -0.5969 | |
| 75 | C | A | 0.0000 | |
| 76 | L | A | 0.0000 | |
| 77 | S | A | -0.2536 | |
| 78 | Q | A | -0.3726 | |
| 79 | L | A | 0.0000 | |
| 80 | H | A | 0.0000 | |
| 81 | S | A | -0.4402 | |
| 82 | G | A | 0.0000 | |
| 83 | L | A | 0.0000 | |
| 84 | F | A | -0.2498 | |
| 85 | L | A | -0.0687 | |
| 86 | Y | A | 0.0000 | |
| 87 | Q | A | -0.6775 | |
| 88 | G | A | -0.6919 | |
| 89 | L | A | 0.0000 | |
| 90 | L | A | 0.0000 | |
| 91 | Q | A | -1.8170 | |
| 92 | A | A | -1.2608 | |
| 93 | L | A | 0.0000 | |
| 94 | E | A | -2.4333 | |
| 95 | G | A | -1.9843 | |
| 96 | I | A | 0.0000 | |
| 97 | S | A | -1.2979 | |
| 98 | P | A | -1.2629 | |
| 99 | E | A | -2.1666 | |
| 100 | L | A | 0.0000 | |
| 101 | G | A | -1.4524 | |
| 102 | P | A | -1.1020 | |
| 103 | T | A | -1.0502 | |
| 104 | L | A | 0.0000 | |
| 105 | D | A | -1.2392 | |
| 106 | T | A | -0.3498 | |
| 107 | L | A | 0.0000 | |
| 108 | Q | A | -0.6412 | |
| 109 | L | A | 0.2909 | |
| 110 | D | A | -0.9547 | |
| 111 | V | A | 0.0000 | |
| 112 | A | A | -0.5425 | |
| 113 | D | A | -1.5850 | |
| 114 | F | A | 0.0000 | |
| 115 | A | A | 0.0000 | |
| 116 | T | A | -1.0061 | |
| 117 | T | A | -1.0462 | |
| 118 | I | A | 0.0000 | |
| 119 | W | A | -1.4926 | |
| 120 | Q | A | -2.2218 | |
| 121 | Q | A | 0.0000 | |
| 122 | M | A | 0.0000 | |
| 123 | E | A | -3.0089 | |
| 124 | E | A | -2.7818 | |
| 125 | L | A | -1.1157 | |
| 126 | G | A | -1.4259 | |
| 127 | M | A | -0.8915 | |
| 128 | A | A | -1.0306 | |
| 129 | P | A | -0.1147 | |
| 130 | A | A | 0.4685 | |
| 131 | L | A | 0.9312 | |
| 132 | Q | A | -0.6791 | |
| 133 | P | A | -0.6500 | |
| 134 | T | A | -0.7211 | |
| 135 | Q | A | -1.3961 | |
| 136 | G | A | -0.4535 | |
| 137 | A | A | -0.1900 | |
| 138 | M | A | -0.0621 | |
| 139 | P | A | 0.0518 | |
| 140 | A | A | 0.0100 | |
| 141 | F | A | 0.0000 | |
| 142 | A | A | 0.1007 | |
| 143 | S | A | 0.1205 | |
| 144 | A | A | 0.2754 | |
| 145 | F | A | 0.8565 | |
| 146 | Q | A | 0.0522 | |
| 147 | R | A | -0.7162 | |
| 148 | R | A | -0.2438 | |
| 149 | A | A | 0.0000 | |
| 150 | G | A | 0.0000 | |
| 151 | G | A | 0.0000 | |
| 152 | V | A | 0.0000 | |
| 153 | L | A | 0.0000 | |
| 154 | V | A | 0.0000 | |
| 155 | A | A | 0.0000 | |
| 156 | S | A | -0.5304 | |
| 157 | H | A | -0.2972 | |
| 158 | L | A | 0.0000 | |
| 159 | Q | A | -0.8058 | |
| 160 | S | A | -0.4861 | |
| 161 | F | A | 0.0000 | |
| 162 | L | A | 0.0000 | |
| 163 | E | A | -1.2847 | |
| 164 | V | A | -0.2302 | |
| 165 | S | A | 0.0000 | |
| 166 | Y | A | -1.6356 | |
| 167 | R | A | -2.4198 | |
| 168 | V | A | 0.0000 | |
| 169 | L | A | 0.0000 | |
| 170 | R | A | -2.5453 | |
| 171 | H | A | -2.5142 | |
| 172 | L | A | -1.5328 | |
| 173 | A | A | 0.0000 | |
| 174 | Q | A | -1.9935 | |
| 175 | P | A | -0.6881 |