Project name: GCSF

Status: done

Started: 2020-11-19 10:08:38
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Chain sequence(s) A: MTPLGPASSLPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPLSSCPSQALQLAGCLSQLHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGMAPALQPTQGAMPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRHLAQP
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:01:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:01:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:01:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:01:03)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:27)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:02:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:28)
Show buried residues

Minimal score value
-3.0704
Maximal score value
1.6205
Average score
-0.5931
Total score value
-103.8002

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 1.0995
2 T A 0.5214
3 P A 0.5926
4 L A 1.2907
5 G A 0.3166
6 P A 0.0376
7 A A 0.0633
8 S A -0.3584
9 S A -0.0785
10 L A 0.0000
11 P A -0.6051
12 Q A -1.4881
13 S A -0.8745
14 F A 0.0000
15 L A 0.0000
16 L A -0.8081
17 K A -1.5953
18 C A 0.0000
19 L A 0.0000
20 E A -2.4556
21 Q A -2.3541
22 V A 0.0000
23 R A -2.9950
24 K A -3.0704
25 I A 0.0000
26 Q A -2.0003
27 G A -1.6616
28 D A -1.6573
29 G A -1.2896
30 A A -1.2569
31 A A -1.1684
32 L A 0.0000
33 Q A -1.5287
34 E A -2.4013
35 K A -2.0815
36 L A 0.0000
37 C A -1.3936
38 A A -1.0542
39 T A -1.0304
40 Y A -0.6234
41 K A -1.7220
42 L A -1.2441
43 C A -1.4713
44 H A -1.9915
45 P A -1.3480
46 E A -2.1644
47 E A -2.1167
48 L A 0.0000
49 V A 1.0554
50 L A 1.6205
51 L A 0.8218
52 G A 0.5521
53 H A -0.4367
54 S A -0.0898
55 L A -0.1677
56 G A -0.5150
57 I A 0.0000
58 P A 0.3097
59 W A 1.0359
60 A A 0.0000
61 P A 0.1871
62 L A 0.0090
63 S A -0.3510
64 S A -0.4692
65 C A 0.0000
66 P A -0.7459
67 S A -0.7683
68 Q A -0.8301
69 A A -0.3492
70 L A 0.1774
71 Q A -0.9799
72 L A 0.0000
73 A A -0.3550
74 G A -0.5969
75 C A 0.0000
76 L A 0.0000
77 S A -0.2536
78 Q A -0.3726
79 L A 0.0000
80 H A 0.0000
81 S A -0.4402
82 G A 0.0000
83 L A 0.0000
84 F A -0.2498
85 L A -0.0687
86 Y A 0.0000
87 Q A -0.6775
88 G A -0.6919
89 L A 0.0000
90 L A 0.0000
91 Q A -1.8170
92 A A -1.2608
93 L A 0.0000
94 E A -2.4333
95 G A -1.9843
96 I A 0.0000
97 S A -1.2979
98 P A -1.2629
99 E A -2.1666
100 L A 0.0000
101 G A -1.4524
102 P A -1.1020
103 T A -1.0502
104 L A 0.0000
105 D A -1.2392
106 T A -0.3498
107 L A 0.0000
108 Q A -0.6412
109 L A 0.2909
110 D A -0.9547
111 V A 0.0000
112 A A -0.5425
113 D A -1.5850
114 F A 0.0000
115 A A 0.0000
116 T A -1.0061
117 T A -1.0462
118 I A 0.0000
119 W A -1.4926
120 Q A -2.2218
121 Q A 0.0000
122 M A 0.0000
123 E A -3.0089
124 E A -2.7818
125 L A -1.1157
126 G A -1.4259
127 M A -0.8915
128 A A -1.0306
129 P A -0.1147
130 A A 0.4685
131 L A 0.9312
132 Q A -0.6791
133 P A -0.6500
134 T A -0.7211
135 Q A -1.3961
136 G A -0.4535
137 A A -0.1900
138 M A -0.0621
139 P A 0.0518
140 A A 0.0100
141 F A 0.0000
142 A A 0.1007
143 S A 0.1205
144 A A 0.2754
145 F A 0.8565
146 Q A 0.0522
147 R A -0.7162
148 R A -0.2438
149 A A 0.0000
150 G A 0.0000
151 G A 0.0000
152 V A 0.0000
153 L A 0.0000
154 V A 0.0000
155 A A 0.0000
156 S A -0.5304
157 H A -0.2972
158 L A 0.0000
159 Q A -0.8058
160 S A -0.4861
161 F A 0.0000
162 L A 0.0000
163 E A -1.2847
164 V A -0.2302
165 S A 0.0000
166 Y A -1.6356
167 R A -2.4198
168 V A 0.0000
169 L A 0.0000
170 R A -2.5453
171 H A -2.5142
172 L A -1.5328
173 A A 0.0000
174 Q A -1.9935
175 P A -0.6881
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Laboratory of Theory of Biopolymers 2018