Project name: 5dk3_alpha [mutate: LA4A]

Status: done

Started: 2020-06-26 10:19:07
Settings
Chain sequence(s) A: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
C: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
B: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS
D: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS
input PDB
Selected Chain(s) A,B,C,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode Yes
Automated mutations No
Mutated residues LA4A
Energy difference between WT (input) and mutated protein (by FoldX) 2.10182 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:46:20)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:46:32)
[INFO]       CABS:     Running CABS flex simulation                                                (01:03:11)
[INFO]       Analysis: Starting Aggrescan3D on model_10.pdb                                        (12:39:35)
[INFO]       Analysis: Starting Aggrescan3D on model_7.pdb                                         (12:40:16)
[INFO]       Analysis: Starting Aggrescan3D on model_9.pdb                                         (12:40:59)
[INFO]       Analysis: Starting Aggrescan3D on model_8.pdb                                         (12:41:41)
[INFO]       Analysis: Starting Aggrescan3D on model_11.pdb                                        (12:42:29)
[INFO]       Analysis: Starting Aggrescan3D on model_6.pdb                                         (12:43:15)
[INFO]       Analysis: Starting Aggrescan3D on model_4.pdb                                         (12:43:58)
[INFO]       Analysis: Starting Aggrescan3D on model_2.pdb                                         (12:44:40)
[INFO]       Analysis: Starting Aggrescan3D on model_5.pdb                                         (12:45:23)
[INFO]       Analysis: Starting Aggrescan3D on model_1.pdb                                         (12:46:06)
[INFO]       Analysis: Starting Aggrescan3D on model_0.pdb                                         (12:46:52)
[INFO]       Analysis: Starting Aggrescan3D on model_3.pdb                                         (12:47:40)
[INFO]       Analysis: Starting Aggrescan3D on input.pdb                                           (12:48:26)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (12:50:23)
[INFO]       Movie:    Creting movie with webm format                                              (13:21:33)
[INFO]       Main:     Simulation completed successfully.                                          (13:22:21)
Show buried residues

Minimal score value
-3.9382
Maximal score value
2.1974
Average score
-0.6327
Total score value
-837.6463

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.3370
2 I A 1.1514
3 V A 0.5506
4 A A 0.0000 mutated: LA4A
5 T A -0.5917
6 Q A -0.8431
7 S A -0.7832
8 P A -0.5205
9 A A -0.2460
10 T A -0.2228
11 L A -0.4646
12 S A -0.9189
13 L A 0.0000
14 S A -1.5629
15 P A -1.6067
16 G A -1.9308
17 E A -2.9808
18 R A -2.8460
19 A A -1.3424
20 T A -0.1644
21 L A -0.3498
22 S A -0.6716
23 C A 0.0000
24 R A -2.3927
25 A A 0.0000
26 S A -1.6486
27 K A -1.7675
28 G A -0.7147
29 V A 1.0371
30 S A 0.0263
31 T A -0.1392
32 S A 0.0000
33 G A -0.8694
34 Y A 0.0000
35 S A -0.7605
36 Y A 0.0000
37 L A 0.0000
38 H A 0.0000
39 W A 0.0000
40 Y A 0.0000
41 Q A 0.0000
42 Q A 0.0000
43 K A -1.2841
44 P A -1.3483
45 G A -1.0477
46 Q A -1.1455
47 A A -0.7305
48 P A 0.0000
49 R A 0.0000
50 L A 0.0000
51 L A 0.0000
52 I A 1.3120
53 Y A 0.0000
54 L A 0.9969
55 A A 0.8390
56 S A 0.9555
57 Y A 1.0731
58 L A 1.6756
59 E A 0.5998
60 S A 0.8378
61 G A 0.4540
62 V A 1.7191
63 P A 0.8027
64 A A 0.8128
65 R A 0.0000
66 F A 2.1974
67 S A 0.0000
68 G A 0.0000
69 S A 0.0205
70 G A -0.4815
71 S A -0.9862
72 G A -1.1658
73 T A -1.6471
74 D A -1.8112
75 F A 0.0000
76 T A -0.6584
77 L A 0.0000
78 T A 0.2616
79 I A 0.0000
80 S A 0.0000
81 S A -1.2537
82 L A -1.0693
83 E A -1.2019
84 P A -1.2761
85 E A -1.2080
86 D A -2.2948
87 F A -1.1008
88 A A 0.0000
89 V A -0.6770
90 Y A 0.0000
91 Y A 0.0000
92 C A 0.0000
93 Q A 0.0000
94 H A 0.0000
95 S A 0.0000
96 R A -2.6015
97 D A -1.9026
98 L A -1.5365
99 P A -0.7582
100 L A 0.0000
101 T A 0.0747
102 F A 0.6255
103 G A 0.0959
104 G A -0.2999
105 G A 0.0000
106 T A 0.0000
107 K A -0.3786
108 V A 0.0000
109 E A -0.7634
110 I A 0.0000
111 K A 0.0000
112 R A -0.9915
113 T A -0.5780
114 V A 0.1030
115 A A 0.2728
116 A A 0.0679
117 P A 0.0000
118 S A 0.0000
119 V A 0.0000
120 F A 0.0000
121 I A 0.0000
122 F A 0.0000
123 P A 0.0000
124 P A 0.0000
125 S A -1.3599
126 D A -2.5535
127 E A -2.1671
128 Q A 0.0000
129 L A -1.9668
130 K A -2.5185
131 S A -1.6005
132 G A -1.2444
133 T A -0.7699
134 A A 0.0000
135 S A 0.0000
136 V A 0.0000
137 V A 0.0000
138 C A 0.0000
139 L A 0.0000
140 L A 0.0000
141 N A 0.0000
142 N A -0.4433
143 F A 0.0000
144 Y A -0.2092
145 P A -0.7425
146 R A -1.6703
147 E A -2.5507
148 A A -1.9649
149 K A -2.7205
150 V A -1.9032
151 Q A -1.8260
152 W A 0.0000
153 K A -2.3905
154 V A 0.0000
155 D A -2.8171
156 N A -2.6244
157 A A -1.7102
158 L A 0.3074
159 Q A 0.0000
160 S A -1.3992
161 G A -1.1900
162 N A -1.0860
163 S A -1.6013
164 Q A -1.1511
165 E A -1.5246
166 S A 0.0000
167 V A 0.9633
168 T A 0.0000
169 E A -1.4898
170 Q A 0.0000
171 D A -2.2244
172 S A -1.2737
173 K A -0.9654
174 D A -1.6037
175 S A -1.5704
176 T A 0.0000
177 Y A -0.3223
178 S A 0.0000
179 L A -0.0145
180 S A 0.0000
181 S A 0.0000
182 T A 0.0000
183 L A 0.0000
184 T A -0.0596
185 L A 0.0000
186 S A -0.5266
187 K A -1.6722
188 A A -1.4737
189 D A -2.0598
190 Y A 0.0000
191 E A -3.6766
192 K A -3.7059
193 H A 0.0000
194 K A -3.3269
195 V A -2.1416
196 Y A 0.0000
197 A A -1.1455
198 C A 0.0000
199 E A -1.3614
200 V A 0.0000
201 T A -1.4571
202 H A 0.0000
203 Q A -2.2978
204 G A -1.3848
205 L A -0.5555
206 S A -0.7170
207 S A -0.3313
208 P A -0.5704
209 V A -0.2985
210 T A -0.5744
211 K A -0.8837
212 S A -0.8249
213 F A 0.0000
214 N A -1.5894
215 R A -1.8401
216 G A -2.1832
217 E A -1.8077
218 C A 0.0000
1 Q B -0.4710
2 V B 0.9338
3 Q B 0.0000
4 L B 0.0000
5 V B -0.2907
6 Q B 0.0000
7 S B -0.2779
8 G B 0.4747
9 V B 1.5402
10 E B 0.7394
11 V B 1.2771
12 K B 0.0000
13 K B -1.3872
14 P B -1.1084
15 G B -1.0705
16 A B -0.9692
17 S B -1.7360
18 V B 0.0000
19 K B -2.0348
20 V B 0.0000
21 S B -0.7983
22 C B 0.0000
23 K B -1.6883
24 A B -0.7562
25 S B -0.5025
26 G B -0.4247
27 Y B 0.0000
28 T B -0.7282
29 F B 0.0000
30 T B -0.9034
31 N B -1.3917
32 Y B 0.0000
33 Y B -0.3594
34 M B 0.0000
35 Y B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B 0.0000
40 A B -0.8044
41 P B -0.9340
42 G B -1.3271
43 Q B -1.7378
44 G B -1.0257
45 L B -0.3111
46 E B -0.3273
47 W B 0.1123
48 M B 0.0000
49 G B 0.0000
50 G B 0.0000
51 I B 0.0000
52 N B 0.0000
53 P B 0.0000
54 S B -1.3017
55 N B -2.0012
56 G B -1.5167
57 G B -1.0375
58 T B -0.5590
59 N B -0.7454
60 F B 0.2452
61 N B -1.2172
62 E B -3.0436
63 K B -2.9290
64 F B -2.2367
65 K B -3.1292
66 N B 0.0000
67 R B -3.3104
68 V B 0.0000
69 T B -1.2441
70 L B 0.0000
71 T B -0.6239
72 T B -1.2262
73 D B -1.9909
74 S B -1.3364
75 S B -0.8996
76 T B -0.9709
77 T B -1.0962
78 T B -1.3481
79 A B 0.0000
80 Y B -0.7861
81 M B 0.0000
82 E B -2.2676
83 L B 0.0000
84 K B -2.9253
85 S B 0.0000
86 L B -0.6199
87 Q B -1.3567
88 F B 0.0000
89 D B -2.0927
90 D B 0.0000
91 T B -0.4845
92 A B 0.0000
93 V B 0.1115
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 R B 0.0000
99 R B -0.4449
100 D B 0.0046
101 Y B 0.9616
102 R B 0.0000
103 F B 1.3896
104 D B 0.2850
105 M B 0.0000
106 G B 0.0000
107 F B 0.0000
108 D B 0.0000
109 Y B 0.4569
110 W B 0.0000
111 G B -0.3259
112 Q B -0.6047
113 G B -0.3274
114 T B 0.0000
115 T B 0.7181
116 V B 0.0000
117 T B 0.2400
118 V B -0.4816
119 S B -0.6120
120 S B -0.5747
121 A B -0.2061
122 S B -0.5374
123 T B -0.6990
124 K B -1.8398
125 G B -1.6763
126 P B -0.8639
127 S B -0.6299
128 V B 0.0000
129 F B 0.0000
130 P B 0.0000
131 L B 0.0000
132 A B 0.0000
133 P B 0.0000
134 C B 0.0000
135 S B 0.0000
136 R B -2.1518
137 S B -1.3166
138 T B -0.8075
139 S B -0.8263
140 E B -1.2788
141 S B -1.3392
142 T B 0.0000
143 A B 0.0000
144 A B 0.0000
145 L B 0.0000
146 G B 0.0000
147 C B 0.0000
148 L B 0.0000
149 V B 0.0000
150 K B 0.0000
151 D B -0.5409
152 Y B 0.0746
153 F B 0.0109
154 P B 0.2097
155 E B 0.0000
156 P B -0.5396
157 V B 0.0000
158 T B -0.7954
159 V B -0.3950
160 S B -0.4079
161 W B -0.4363
162 N B -1.3040
163 S B -0.6132
164 G B -0.4532
165 A B -0.2532
166 L B 0.1502
167 T B -0.0326
168 S B -0.1622
169 G B -0.3982
170 V B -0.3596
171 H B 0.0000
172 T B -0.0790
173 F B 0.0685
174 P B 0.1250
175 A B 0.2798
176 V B 0.0000
177 L B 1.2833
178 Q B 0.4377
179 S B 0.2544
180 S B -0.1884
181 G B 0.0522
182 L B 1.2188
183 Y B 0.0000
184 S B 0.0000
185 L B 0.0000
186 S B 0.0000
187 S B 0.0000
188 V B 0.0000
189 V B 0.0000
190 T B -0.1734
191 V B 0.0000
192 P B -0.6070
193 S B -0.5507
194 S B -0.7026
195 S B -0.2173
196 L B -0.2202
197 G B -0.7580
198 T B -0.7861
199 K B -0.8528
200 T B -0.8039
201 Y B 0.0000
202 T B -1.7988
203 C B 0.0000
204 N B -1.9149
205 V B 0.0000
206 D B -2.1822
207 H B 0.0000
208 K B -2.6704
209 P B -1.8345
210 S B -2.1100
211 N B -2.5509
212 T B -2.3442
213 K B -2.9446
214 V B -2.1662
215 D B -3.1342
216 K B -2.8504
217 R B -2.8475
218 V B 0.0000
219 E B 0.0000
220 S B -1.4240
221 K B -1.8589
222 Y B 0.0000
223 G B -0.9613
224 P B 0.0000
225 P B -0.5367
226 C B -0.1746
227 P B 0.1162
228 P B -0.2750
229 C B -0.2371
230 P B -0.0697
231 A B 0.0000
232 P B 0.1292
233 E B 0.2570
234 F B 1.0496
235 L B 0.6343
236 G B 0.0713
237 G B 0.1201
238 P B 0.0000
239 S B 0.2285
240 V B 0.6200
241 F B 1.6852
242 L B 1.3767
243 F B 1.3842
244 P B 0.0000
245 P B -0.6537
246 K B -2.2022
247 P B -2.5040
248 K B -2.7937
249 D B -2.7119
250 T B -0.8516
251 L B -0.0159
252 M B 0.1685
253 I B 0.9419
254 S B -0.6286
255 R B -2.3607
256 T B 0.0000
257 P B 0.0000
258 E B -0.9554
259 V B 0.0000
260 T B 0.2458
261 C B 0.0000
262 V B 0.0000
263 V B 0.0000
264 V B 0.0000
265 D B 0.0000
266 V B -0.1679
267 S B -0.7506
268 Q B -1.1576
269 E B -2.3270
270 D B 0.0000
271 P B -2.1796
272 E B -2.8706
273 V B -1.6405
274 Q B -1.5942
275 F B -1.1539
276 N B -1.2651
277 W B -0.8526
278 Y B -0.1725
279 V B -0.9156
280 D B -1.6135
281 G B -1.3412
282 V B 0.0000
283 E B -2.3411
284 V B 0.0000
285 H B -2.1433
286 N B -1.9802
287 A B -1.9271
288 K B -2.2570
289 T B -1.7079
290 K B -1.8327
291 P B -1.7265
292 R B -2.2228
293 E B -2.2502
294 E B -2.7600
295 Q B -1.8677
296 F B 0.0000
297 N B -2.0051
298 S B -1.3247
299 T B -1.1421
300 Y B -1.5273
301 R B 0.0000
302 V B 0.0000
303 V B -0.5307
304 S B 0.0000
305 V B 0.0000
306 L B 0.0000
307 T B 0.0000
308 V B 0.0000
309 L B -0.1849
310 H B -1.4436
311 Q B -1.5158
312 D B -1.5789
313 W B 0.0000
314 L B 0.4133
315 N B -1.4102
316 G B -1.4742
317 K B 0.0000
318 E B -2.3390
319 Y B 0.0000
320 K B -1.4165
321 C B 0.0000
322 K B -1.7177
323 V B 0.0000
324 S B -1.5845
325 N B 0.0000
326 K B -2.7292
327 G B -2.0827
328 L B -1.4463
329 P B -0.7772
330 S B -0.6248
331 S B -0.9541
332 I B 0.0000
333 E B -2.0762
334 K B 0.0000
335 T B -1.0635
336 I B -0.6078
337 S B -1.1602
338 K B -1.0640
339 A B -1.2778
340 K B -1.3715
341 G B -1.3915
342 Q B -1.0475
343 P B -0.8565
344 R B 0.0000
345 E B -0.5888
346 P B -0.4973
347 Q B -0.6291
348 V B 0.0000
349 Y B 0.0000
350 T B 0.0000
351 L B 0.0000
352 P B -0.2897
353 P B 0.0000
354 S B -0.7055
355 Q B 0.0000
356 E B -2.4137
357 E B -1.2966
358 M B 0.0335
359 T B -0.4444
360 K B -1.4251
361 N B -2.3218
362 Q B 0.0000
363 V B 0.0000
364 S B 0.0000
365 L B 0.0000
366 T B 0.0000
367 C B 0.0000
368 L B 0.0000
369 V B 0.0000
370 K B 0.0000
371 G B 0.0621
372 F B -0.0151
373 Y B 0.0000
374 P B 0.0944
375 S B -0.3005
376 D B -0.4565
377 I B 0.0000
378 A B -0.5262
379 V B 0.0000
380 E B -2.0337
381 W B 0.0000
382 E B -2.8051
383 S B -1.9305
384 N B -2.2184
385 G B -1.7625
386 Q B 0.0000
387 P B -1.7271
388 E B -1.6745
389 N B -1.2869
390 N B 0.0000
391 Y B 0.3948
392 K B 0.1477
393 T B -0.0538
394 T B 0.0000
395 P B 0.1347
396 P B 0.2780
397 V B 0.0000
398 L B 1.4914
399 D B 0.0000
400 S B -0.1482
401 D B -0.7415
402 G B -0.2787
403 S B 0.0000
404 F B 0.9328
405 F B 0.0000
406 L B 0.0000
407 Y B 0.0000
408 S B 0.0000
409 R B 0.0000
410 L B 0.0000
411 T B 0.0000
412 V B 0.0000
413 D B -1.9406
414 K B -2.4624
415 S B -1.7559
416 R B 0.0000
417 W B -1.6565
418 Q B -2.1719
419 Q B -2.2019
420 G B -1.8112
421 N B -1.4805
422 V B -0.7319
423 F B 0.0000
424 S B -1.5695
425 C B 0.0000
426 S B 0.0000
427 V B 0.0000
428 M B -0.7543
429 H B -0.5465
430 E B -0.9284
431 A B -0.2481
432 L B 0.5528
433 H B -1.0532
434 N B -1.2106
435 H B -0.9941
436 Y B 0.0007
437 T B -0.5339
438 Q B -1.5218
439 K B -0.9529
440 S B -0.8304
441 L B 0.0000
442 S B -0.3667
443 L B 0.0000
444 S B -0.3042
1 E C -1.2722
2 I C 0.4890
3 V C 1.1711
4 L C 0.0000
5 T C -0.2836
6 Q C -0.7497
7 S C -0.8800
8 P C -0.6135
9 A C -0.3351
10 T C -0.7745
11 L C -0.9275
12 S C -1.5186
13 L C 0.0000
14 S C -1.6982
15 P C -1.4210
16 G C -1.8743
17 E C -3.0660
18 R C -2.9132
19 A C 0.0000
20 T C -1.0200
21 L C 0.0000
22 S C -0.7401
23 C C 0.0000
24 R C -1.7871
25 A C 0.0000
26 S C -0.6608
27 K C -1.7327
28 G C -0.7197
29 V C 0.5662
30 S C -0.3837
31 T C -0.1709
32 S C -0.5942
33 G C 0.0000
34 Y C 0.0000
35 S C 0.0824
36 Y C 0.0000
37 L C 0.4450
38 H C 0.0000
39 W C 0.0000
40 Y C 0.0000
41 Q C 0.0000
42 Q C 0.0000
43 K C -2.4155
44 P C -1.8914
45 G C -1.4267
46 Q C -1.6488
47 A C 0.0000
48 P C 0.0000
49 R C -0.9119
50 L C 0.0000
51 L C 0.0000
52 I C 0.0000
53 Y C 0.0000
54 L C 1.3986
55 A C 0.3088
56 S C 0.2166
57 Y C 0.3519
58 L C 0.0000
59 E C -0.2397
60 S C 0.0000
61 G C -0.4127
62 V C 0.0194
63 P C -0.3799
64 A C 0.0000
65 R C -1.8119
66 F C -1.1165
67 S C -1.0474
68 G C -0.9031
69 S C -0.7957
70 G C -0.9693
71 S C -0.9934
72 G C -1.2298
73 T C -1.1511
74 D C -1.4646
75 F C -0.7889
76 T C -0.7549
77 L C 0.0000
78 T C -1.1845
79 I C 0.0000
80 S C -2.0319
81 S C -1.5791
82 L C -1.2574
83 E C -1.2923
84 P C -1.5007
85 E C -2.4439
86 D C 0.0000
87 F C 0.0000
88 A C -1.8033
89 V C 0.0000
90 Y C 0.0000
91 Y C 0.0000
92 C C 0.0000
93 Q C 0.0000
94 H C 0.0000
95 S C 0.0000
96 R C -1.0336
97 D C -1.6537
98 L C -0.8294
99 P C -0.6536
100 L C 0.0000
101 T C 0.0000
102 F C 0.4677
103 G C 0.0000
104 G C -0.5671
105 G C -0.9722
106 T C 0.0000
107 K C -2.1619
108 V C 0.0000
109 E C -1.9944
110 I C -1.0900
111 K C -1.4562
112 R C -1.7730
113 T C -1.2782
114 V C 0.0000
115 A C 0.0000
116 A C -0.7412
117 P C 0.0000
118 S C 0.0000
119 V C 0.0000
120 F C 0.0000
121 I C 0.0000
122 F C 0.0000
123 P C 0.0000
124 P C 0.0000
125 S C 0.0000
126 D C -2.8456
127 E C -2.3589
128 Q C 0.0000
129 L C -1.9764
130 K C -2.5433
131 S C -1.7449
132 G C -1.3864
133 T C -1.1012
134 A C 0.0000
135 S C 0.0000
136 V C 0.0000
137 V C 0.0000
138 C C 0.0000
139 L C 0.0000
140 L C 0.0000
141 N C 0.0000
142 N C 0.0000
143 F C 0.0000
144 Y C -1.2975
145 P C -1.6742
146 R C -3.0789
147 E C -2.8642
148 A C 0.0000
149 K C -2.7907
150 V C 0.0000
151 Q C -1.5039
152 W C 0.0000
153 K C -1.2342
154 V C 0.0000
155 D C -2.9553
156 N C -2.4866
157 A C -0.8227
158 L C 0.1601
159 Q C -0.5589
160 S C -1.0468
161 G C 0.0000
162 N C -1.9450
163 S C -1.4314
164 Q C -1.5147
165 E C -1.8878
166 S C -0.2060
167 V C 0.7967
168 T C 0.0000
169 E C -1.7823
170 Q C -1.9278
171 D C -2.6649
172 S C -1.6525
173 K C -1.7911
174 D C -2.1571
175 S C 0.0000
176 T C 0.0000
177 Y C -1.2856
178 S C 0.0000
179 L C -0.2584
180 S C 0.0000
181 S C 0.0000
182 T C -0.8169
183 L C 0.0000
184 T C -0.2547
185 L C -0.7195
186 S C -1.3962
187 K C -2.8173
188 A C -2.2969
189 D C -2.7500
190 Y C 0.0000
191 E C -3.9382
192 K C -3.9082
193 H C -3.5979
194 K C -3.7192
195 V C -2.7199
196 Y C 0.0000
197 A C -1.0588
198 C C 0.0000
199 E C -1.3642
200 V C 0.0000
201 T C -1.6756
202 H C 0.0000
203 Q C -2.4284
204 G C -1.5528
205 L C 0.0000
206 S C -0.4904
207 S C -0.2521
208 P C -0.5630
209 V C -0.3100
210 T C -0.6069
211 K C -0.7047
212 S C -0.6721
213 F C 0.0000
214 N C -2.3112
215 R C -3.1833
216 G C -2.0623
217 E C -1.8836
218 C C -0.7930
1 Q D -1.4191
2 V D -0.7903
3 Q D -1.1891
4 L D 0.0000
5 V D 0.0438
6 Q D 0.0000
7 S D -0.5699
8 G D -0.5273
9 V D 0.0000
10 E D -0.7443
11 V D 0.0000
12 K D -2.1656
13 K D -2.5183
14 P D -1.6327
15 G D -1.1842
16 A D -1.1965
17 S D -1.3865
18 V D 0.0000
19 K D -1.0242
20 V D 0.0000
21 S D -0.3542
22 C D 0.0000
23 K D -1.1801
24 A D 0.0000
25 S D -0.7926
26 G D -0.8664
27 Y D -0.5164
28 T D -0.6960
29 F D 0.0000
30 T D -0.9487
31 N D -1.3318
32 Y D 0.0000
33 Y D 0.0000
34 M D 0.0000
35 Y D 0.0000
36 W D 0.0000
37 V D 0.0000
38 R D 0.0000
39 Q D 0.0000
40 A D -0.3604
41 P D -0.8955
42 G D -0.9737
43 Q D -1.1580
44 G D -0.6177
45 L D 0.0000
46 E D -0.5674
47 W D 0.0000
48 M D 0.0000
49 G D 0.0000
50 G D -0.0888
51 I D 0.0000
52 N D -1.0443
53 P D -1.2601
54 S D -1.2220
55 N D -1.7687
56 G D -0.7501
57 G D -0.6240
58 T D -0.2067
59 N D -0.3285
60 F D 0.3599
61 N D 0.0000
62 E D -2.6354
63 K D -2.0602
64 F D -0.4017
65 K D -1.9211
66 N D 0.0000
67 R D -2.4575
68 V D -1.5188
69 T D -0.7444
70 L D 0.0790
71 T D -0.1158
72 T D -0.5005
73 D D -1.1934
74 S D -0.8701
75 S D -0.6419
76 T D -0.7525
77 T D -0.9048
78 T D 0.0000
79 A D 0.0000
80 Y D -0.0234
81 M D 0.0000
82 E D -1.4482
83 L D 0.0000
84 K D -2.2987
85 S D -1.0792
86 L D 0.3936
87 Q D 0.2435
88 F D -0.3286
89 D D -1.6178
90 D D -0.9939
91 T D -0.6225
92 A D 0.0000
93 V D -0.1330
94 Y D 0.0000
95 Y D 0.0000
96 C D 0.0000
97 A D 0.0000
98 R D -0.2739
99 R D 0.0000
100 D D 0.0000
101 Y D 0.5112
102 R D -0.5433
103 F D 1.0844
104 D D -0.2690
105 M D 0.0000
106 G D 0.0000
107 F D 0.0000
108 D D 0.0000
109 Y D 0.0000
110 W D -0.5132
111 G D -1.1612
112 Q D -0.7939
113 G D -0.5338
114 T D 0.0000
115 T D 0.0000
116 V D 0.0000
117 T D 0.0000
118 V D -0.5762
119 S D -0.8386
120 S D -1.1153
121 A D -0.4992
122 S D -0.1368
123 T D -0.2906
124 K D -1.3084
125 G D -1.3677
126 P D -0.9235
127 S D -0.8026
128 V D 0.0000
129 F D 0.0000
130 P D -0.9872
131 L D 0.0000
132 A D 0.0000
133 P D 0.0000
134 C D -0.2081
135 S D -0.1482
136 R D 0.0000
137 S D -0.3355
138 T D -0.1058
139 S D 0.1335
140 E D 0.0704
141 S D 0.2593
142 T D 0.0000
143 A D 0.0000
144 A D 0.0000
145 L D 0.0000
146 G D 0.0000
147 C D 0.0000
148 L D 0.0000
149 V D 0.0000
150 K D -0.4547
151 D D -0.6743
152 Y D 0.0000
153 F D 0.7869
154 P D 0.0000
155 E D 0.0000
156 P D -0.1060
157 V D -0.0286
158 T D -0.4187
159 V D -0.0445
160 S D -0.3309
161 W D -0.3715
162 N D -1.4140
163 S D 0.0000
164 G D -0.8159
165 A D -0.3052
166 L D 0.0000
167 T D -0.3918
168 S D 0.0000
169 G D -0.2666
170 V D 0.2378
171 H D 0.0000
172 T D -0.3677
173 F D 0.0000
174 P D 0.2843
175 A D 0.6166
176 V D 0.7071
177 L D 1.5499
178 Q D -0.1548
179 S D -0.3957
180 S D -0.2654
181 G D 0.4101
182 L D 1.6706
183 Y D 1.2749
184 S D 0.0000
185 L D 0.4392
186 S D 0.0331
187 S D 0.0000
188 V D 0.0000
189 V D 0.0000
190 T D 0.0631
191 V D 0.0000
192 P D 0.0361
193 S D 0.2500
194 S D 0.2919
195 S D 0.5142
196 L D 1.3179
197 G D 0.4546
198 T D 0.1883
199 K D 0.0000
200 T D -0.6783
201 Y D 0.0000
202 T D -2.0293
203 C D 0.0000
204 N D -2.2879
205 V D 0.0000
206 D D -2.0657
207 H D 0.0000
208 K D -1.6067
209 P D 0.0000
210 S D -1.4072
211 N D -2.2282
212 T D -2.1853
213 K D -3.0703
214 V D -2.5585
215 D D -3.4252
216 K D -3.4378
217 R D -3.1168
218 V D -1.5263
219 E D 0.0000
220 S D -0.4258
221 K D 0.0000
222 Y D 0.6918
223 G D 0.3816
224 P D -0.1572
225 P D -0.7302
226 C D 0.0000
227 P D 0.0000
228 P D -0.9869
229 C D 0.0000
230 P D -0.5172
231 A D 0.0602
232 P D 0.2143
233 E D 0.4602
234 F D 1.2711
235 L D 1.4847
236 G D 0.0760
237 G D -0.7085
238 P D 0.0000
239 S D -0.1093
240 V D 0.0000
241 F D 1.9918
242 L D 0.0000
243 F D 0.0000
244 P D -0.5614
245 P D 0.0000
246 K D -2.2020
247 P D -1.8323
248 K D -1.5760
249 D D 0.0000
250 T D 0.0000
251 L D 0.0000
252 M D 0.3091
253 I D 0.3611
254 S D -0.2287
255 R D -0.7993
256 T D 0.0000
257 P D -0.8008
258 E D -1.6534
259 V D 0.0000
260 T D -0.7062
261 C D 0.0000
262 V D 0.0000
263 V D 0.0000
264 V D -0.7563
265 D D -2.0678
266 V D 0.0000
267 S D -2.1404
268 Q D -2.5112
269 E D -3.3733
270 D D -3.7543
271 P D -3.0727
272 E D -3.1670
273 V D 0.0000
274 Q D -2.4837
275 F D 0.0000
276 N D -1.7096
277 W D 0.0000
278 Y D -0.4132
279 V D -1.1316
280 D D -2.6915
281 G D -2.1731
282 V D 0.0000
283 E D -1.9594
284 V D -1.6182
285 H D -1.8046
286 N D -2.5122
287 A D 0.0000
288 K D -2.7475
289 T D -2.2763
290 K D -2.6179
291 P D -2.5941
292 R D -3.2920
293 E D -3.8743
294 E D -3.9214
295 Q D -2.6521
296 F D -0.1592
297 N D -0.7640
298 S D -1.4443
299 T D -2.0805
300 Y D 0.0000
301 R D -3.4104
302 V D 0.0000
303 V D -1.0790
304 S D 0.0000
305 V D 0.0000
306 L D 0.0000
307 T D -1.0065
308 V D 0.0000
309 L D 0.2969
310 H D -0.1470
311 Q D -1.0068
312 D D -1.2079
313 W D 0.0000
314 L D -0.0361
315 N D -1.7973
316 G D -1.7183
317 K D 0.0000
318 E D -2.6142
319 Y D 0.0000
320 K D -1.3976
321 C D 0.0000
322 K D -2.0109
323 V D 0.0000
324 S D -1.6169
325 N D 0.0000
326 K D -3.0768
327 G D -2.4826
328 L D -1.6094
329 P D -0.8859
330 S D -0.8889
331 S D -1.0698
332 I D -0.9592
333 E D -2.2843
334 K D -1.6257
335 T D -1.3762
336 I D -0.8401
337 S D -0.9624
338 K D -0.8148
339 A D -0.7403
340 K D -1.3366
341 G D -1.1455
342 Q D -0.9767
343 P D -0.8710
344 R D -0.5546
345 E D 0.0000
346 P D -0.1963
347 Q D 0.0000
348 V D 1.1103
349 Y D 0.8225
350 T D 0.4160
351 L D 0.0000
352 P D 0.0612
353 P D 0.0000
354 S D -0.4752
355 Q D -1.0192
356 E D -1.2230
357 E D 0.0000
358 M D -0.7611
359 T D -1.0706
360 K D -1.9869
361 N D -2.6287
362 Q D -2.2733
363 V D 0.0000
364 S D 0.0000
365 L D 0.0000
366 T D 0.0000
367 C D 0.0000
368 L D 0.0000
369 V D 0.0000
370 K D 0.0000
371 G D 0.1967
372 F D 0.3230
373 Y D 0.0000
374 P D 0.0000
375 S D -0.4964
376 D D -0.4571
377 I D 0.0048
378 A D -0.0267
379 V D -0.4018
380 E D -1.2504
381 W D -1.2490
382 E D -2.1937
383 S D -1.6458
384 N D -1.7811
385 G D -1.6066
386 Q D 0.0000
387 P D -0.8466
388 E D -1.0930
389 N D -1.2832
390 N D 0.0000
391 Y D 0.2212
392 K D 0.0000
393 T D 0.2804
394 T D 0.0000
395 P D 0.1173
396 P D 0.0317
397 V D 0.0000
398 L D 0.6434
399 D D 0.0071
400 S D 0.0000
401 D D -0.4488
402 G D -0.4111
403 S D 0.0000
404 F D 0.5355
405 F D 0.0000
406 L D 0.3632
407 Y D 0.0000
408 S D 0.0000
409 R D 0.0000
410 L D 0.0000
411 T D 0.0000
412 V D 0.0000
413 D D -2.6433
414 K D -3.2338
415 S D -2.3745
416 R D -3.1782
417 W D -1.9090
418 Q D -1.2579
419 Q D -1.7745
420 G D -1.7503
421 N D -1.1646
422 V D -0.2569
423 F D 0.0000
424 S D -1.1567
425 C D 0.0000
426 S D 0.0000
427 V D 0.0000
428 M D -0.1443
429 H D 0.0278
430 E D 0.0000
431 A D -0.0820
432 L D 0.4227
433 H D -0.0759
434 N D 0.0000
435 H D -0.2347
436 Y D 0.4096
437 T D -0.0265
438 Q D -1.0152
439 K D 0.0000
440 S D -0.3218
441 L D 0.0000
442 S D 0.2196
443 L D 0.3933
444 S D 0.0385
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CABS-flex predictions of flexibility of input structure

In dynamic mode, A3D analysis is performed on the set of models reflecting fluctuations of the input structure (predicted by CABS-flex method, models are numbered from 0 to 11) and the input model. Their A3D scores are provided below in the table.
The right panel presents comparison of the most aggregation prone model (with the highest A3D score, -0.6327 in this case) with the input model (the most aggregation prone model in blue, input in red) and RMSF plot which shows the extent of residue fluctuations in Angstroms (predicted by CABS-flex).

Model
Average A3D Score
model_2 -0.6327 View CSV PDB
model_4 -0.6475 View CSV PDB
model_3 -0.6497 View CSV PDB
model_1 -0.6532 View CSV PDB
model_7 -0.6542 View CSV PDB
model_6 -0.6564 View CSV PDB
model_11 -0.6644 View CSV PDB
model_0 -0.6815 View CSV PDB
model_8 -0.6823 View CSV PDB
model_10 -0.6875 View CSV PDB
model_9 -0.7106 View CSV PDB
model_5 -0.721 View CSV PDB
input -0.7324 View CSV PDB
 

Laboratory of Theory of Biopolymers 2018