Project name: ttr [mutate: GV67A]

Status: done

Started: 2023-09-25 15:23:03
Settings
Chain sequence(s) A: GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPMHEHAEVVFTANDSGPRRYTIAAMLSPYSYSTMAVVTNPKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GV67A
Energy difference between WT (input) and mutated protein (by FoldX) 6.81674 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:58)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:32)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:01:32)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:33)
Show buried residues

Minimal score value
-3.6695
Maximal score value
2.1563
Average score
-0.9126
Total score value
-115.8988

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.7072
2 P A -0.5994
3 T A -0.2367
4 G A -1.0230
5 T A -0.9794
6 G A -1.5678
7 E A -2.7124
8 S A -2.2407
9 K A -2.6555
10 C A 0.0000
11 P A -1.6047
12 L A -0.4389
13 M A 0.0000
14 V A 0.0000
15 K A -0.5592
16 V A 0.0000
17 L A -0.1948
18 D A 0.0000
19 A A -0.0134
20 V A -0.1357
21 R A -1.6912
22 G A -1.1203
23 S A -0.9334
24 P A -0.9587
25 A A 0.0000
26 I A -0.6210
27 N A -1.5716
28 V A 0.0000
29 A A -1.1761
30 V A 0.0000
31 H A -0.9957
32 V A 0.0000
33 F A -0.3634
34 R A -0.7390
35 K A -1.4921
36 A A -1.6164
37 A A -1.6354
38 D A -2.8275
39 D A -2.9093
40 T A -1.8448
41 W A -1.1898
42 E A -1.7423
43 P A -0.8239
44 F A -0.3895
45 A A -0.2385
46 S A -0.6701
47 G A -1.0685
48 K A -1.6431
49 T A 0.0000
50 S A -1.5583
51 E A -1.9749
52 S A -1.2124
53 G A 0.0000
54 E A -1.4254
55 L A 0.0000
56 H A -1.4384
57 G A -0.9398
58 L A -0.4599
59 T A -1.3159
60 T A -2.2566
61 E A -3.3440
62 E A -3.3479
63 E A -3.0733
64 F A -1.7016
65 V A -1.1888
66 E A -2.1697
67 V A -0.9080 mutated: GV67A
68 I A 0.1095
69 Y A 0.0000
70 K A -0.0936
71 V A 0.0000
72 E A -1.3624
73 I A 0.0000
74 D A -2.0990
75 T A -1.7171
76 K A -2.1983
77 S A -1.4099
78 Y A 0.0000
79 W A 0.0000
80 K A -1.5854
81 A A -0.2647
82 L A 0.8176
83 G A -0.4100
84 I A -0.0392
85 S A -0.1465
86 P A -1.0399
87 M A -0.0683
88 H A -1.8365
89 E A -3.1061
90 H A -2.9027
91 A A -2.0903
92 E A -2.0597
93 V A 0.1354
94 V A 1.0409
95 F A 1.1958
96 T A -0.2793
97 A A -1.4985
98 N A -3.1124
99 D A -3.6695
100 S A -2.7854
101 G A -2.2640
102 P A -1.9158
103 R A -2.8442
104 R A -2.9300
105 Y A -0.9467
106 T A -0.3391
107 I A 0.0000
108 A A 0.4612
109 A A 0.0000
110 M A 0.4697
111 L A 0.0000
112 S A 0.5956
113 P A 0.7161
114 Y A 1.5774
115 S A 1.1023
116 Y A 1.4366
117 S A 0.7425
118 T A 0.5665
119 M A 1.0300
120 A A 1.2003
121 V A 2.1563
122 V A 1.0079
123 T A -0.1055
124 N A -2.0551
125 P A -2.4114
126 K A -3.4329
127 E A -2.9957
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Laboratory of Theory of Biopolymers 2018