Chain sequence(s) |
A: GPTGTGESKCPLMVKVLDAVRGSPAINVAVHVFRKAADDTWEPFASGKTSESGELHGLTTEEEFVEGIYKVEIDTKSYWKALGISPMHEHAEVVFTANDSGPRRYTIAAMLSPYSYSTMAVVTNPKE
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | GV67A |
Energy difference between WT (input) and mutated protein (by FoldX) | 6.81674 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:01) [INFO] FoldX: Building mutant model (00:00:58) [INFO] FoldX: Starting FoldX energy minimalization (00:01:02) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:32) [CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie creation failed. (00:01:32) [INFO] Main: Simulation completed successfully. (00:01:33) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | G | A | -0.7072 | |
2 | P | A | -0.5994 | |
3 | T | A | -0.2367 | |
4 | G | A | -1.0230 | |
5 | T | A | -0.9794 | |
6 | G | A | -1.5678 | |
7 | E | A | -2.7124 | |
8 | S | A | -2.2407 | |
9 | K | A | -2.6555 | |
10 | C | A | 0.0000 | |
11 | P | A | -1.6047 | |
12 | L | A | -0.4389 | |
13 | M | A | 0.0000 | |
14 | V | A | 0.0000 | |
15 | K | A | -0.5592 | |
16 | V | A | 0.0000 | |
17 | L | A | -0.1948 | |
18 | D | A | 0.0000 | |
19 | A | A | -0.0134 | |
20 | V | A | -0.1357 | |
21 | R | A | -1.6912 | |
22 | G | A | -1.1203 | |
23 | S | A | -0.9334 | |
24 | P | A | -0.9587 | |
25 | A | A | 0.0000 | |
26 | I | A | -0.6210 | |
27 | N | A | -1.5716 | |
28 | V | A | 0.0000 | |
29 | A | A | -1.1761 | |
30 | V | A | 0.0000 | |
31 | H | A | -0.9957 | |
32 | V | A | 0.0000 | |
33 | F | A | -0.3634 | |
34 | R | A | -0.7390 | |
35 | K | A | -1.4921 | |
36 | A | A | -1.6164 | |
37 | A | A | -1.6354 | |
38 | D | A | -2.8275 | |
39 | D | A | -2.9093 | |
40 | T | A | -1.8448 | |
41 | W | A | -1.1898 | |
42 | E | A | -1.7423 | |
43 | P | A | -0.8239 | |
44 | F | A | -0.3895 | |
45 | A | A | -0.2385 | |
46 | S | A | -0.6701 | |
47 | G | A | -1.0685 | |
48 | K | A | -1.6431 | |
49 | T | A | 0.0000 | |
50 | S | A | -1.5583 | |
51 | E | A | -1.9749 | |
52 | S | A | -1.2124 | |
53 | G | A | 0.0000 | |
54 | E | A | -1.4254 | |
55 | L | A | 0.0000 | |
56 | H | A | -1.4384 | |
57 | G | A | -0.9398 | |
58 | L | A | -0.4599 | |
59 | T | A | -1.3159 | |
60 | T | A | -2.2566 | |
61 | E | A | -3.3440 | |
62 | E | A | -3.3479 | |
63 | E | A | -3.0733 | |
64 | F | A | -1.7016 | |
65 | V | A | -1.1888 | |
66 | E | A | -2.1697 | |
67 | V | A | -0.9080 | mutated: GV67A |
68 | I | A | 0.1095 | |
69 | Y | A | 0.0000 | |
70 | K | A | -0.0936 | |
71 | V | A | 0.0000 | |
72 | E | A | -1.3624 | |
73 | I | A | 0.0000 | |
74 | D | A | -2.0990 | |
75 | T | A | -1.7171 | |
76 | K | A | -2.1983 | |
77 | S | A | -1.4099 | |
78 | Y | A | 0.0000 | |
79 | W | A | 0.0000 | |
80 | K | A | -1.5854 | |
81 | A | A | -0.2647 | |
82 | L | A | 0.8176 | |
83 | G | A | -0.4100 | |
84 | I | A | -0.0392 | |
85 | S | A | -0.1465 | |
86 | P | A | -1.0399 | |
87 | M | A | -0.0683 | |
88 | H | A | -1.8365 | |
89 | E | A | -3.1061 | |
90 | H | A | -2.9027 | |
91 | A | A | -2.0903 | |
92 | E | A | -2.0597 | |
93 | V | A | 0.1354 | |
94 | V | A | 1.0409 | |
95 | F | A | 1.1958 | |
96 | T | A | -0.2793 | |
97 | A | A | -1.4985 | |
98 | N | A | -3.1124 | |
99 | D | A | -3.6695 | |
100 | S | A | -2.7854 | |
101 | G | A | -2.2640 | |
102 | P | A | -1.9158 | |
103 | R | A | -2.8442 | |
104 | R | A | -2.9300 | |
105 | Y | A | -0.9467 | |
106 | T | A | -0.3391 | |
107 | I | A | 0.0000 | |
108 | A | A | 0.4612 | |
109 | A | A | 0.0000 | |
110 | M | A | 0.4697 | |
111 | L | A | 0.0000 | |
112 | S | A | 0.5956 | |
113 | P | A | 0.7161 | |
114 | Y | A | 1.5774 | |
115 | S | A | 1.1023 | |
116 | Y | A | 1.4366 | |
117 | S | A | 0.7425 | |
118 | T | A | 0.5665 | |
119 | M | A | 1.0300 | |
120 | A | A | 1.2003 | |
121 | V | A | 2.1563 | |
122 | V | A | 1.0079 | |
123 | T | A | -0.1055 | |
124 | N | A | -2.0551 | |
125 | P | A | -2.4114 | |
126 | K | A | -3.4329 | |
127 | E | A | -2.9957 |