Project name: 4edu

Status: done

Started: 2024-04-24 11:37:05
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Chain sequence(s) A: DFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGITGARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSWPMFLLETLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDGWSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGT
T: VHHRRLLRKG
input PDB
Selected Chain(s) A,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:05)
Show buried residues

Minimal score value
-3.941
Maximal score value
1.765
Average score
-0.698
Total score value
-152.8694

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
32 D A -1.8042
33 F A -1.2602
34 H A -2.1183
35 W A -1.7956
36 E A -3.1866
37 E A -3.8120
38 Y A -2.3153
39 L A -1.9881
40 K A -3.3612
41 E A -3.4235
42 T A -1.5715
43 G A -1.3835
44 S A -0.0440
45 I A 1.1927
46 S A 0.5132
47 A A 0.0000
48 P A -0.7495
49 S A -1.1797
50 E A -2.3629
51 C A 0.0000
52 F A 0.0000
53 R A -1.7983
54 Q A 0.0000
55 S A -0.6398
56 Q A -0.5188
57 I A 1.7650
58 P A 1.1112
59 P A 0.5628
60 V A 1.4730
61 N A -0.3632
62 D A -1.6687
63 F A 0.0000
64 K A -1.5224
65 V A 0.4682
66 G A -0.2450
67 M A -0.5128
68 K A 0.0000
69 L A 0.0000
70 E A 0.0000
71 A A 0.0000
72 R A -1.4505
73 D A 0.0000
74 P A -1.3577
75 R A -2.0860
76 N A -1.1728
77 A A -0.9708
78 T A -0.5943
79 S A 0.0000
80 V A -0.3512
81 C A 0.0000
82 I A 0.0000
83 A A 0.0000
84 T A -0.2924
85 V A 0.0000
86 I A 0.4061
87 G A 0.3908
88 I A 0.3732
89 T A 0.3990
90 G A 0.1511
91 A A 0.0000
92 R A 0.0000
93 L A 0.0000
94 R A -0.1802
95 L A 0.0000
96 R A -1.4181
97 L A 0.0000
98 D A -0.6836
99 G A -0.5583
100 S A -1.4961
101 D A -2.6338
102 N A -3.0168
103 R A -3.4643
104 N A -3.1522
105 D A -1.8873
106 F A 0.0000
107 W A -0.2708
108 R A -0.6767
109 L A 0.0000
110 V A 0.0000
111 D A 0.0000
112 S A -0.9544
113 P A -1.1125
114 D A -0.9466
115 I A 0.0000
116 Q A -0.4688
117 P A 0.0984
118 V A -0.3341
119 G A -1.5356
120 T A -1.8724
121 C A 0.0000
122 E A -3.5621
123 K A -3.9410
124 E A -3.8434
125 G A -3.0517
126 D A -2.6719
127 L A -0.0165
128 L A -0.0219
129 Q A 0.0194
130 P A 0.2179
131 P A 0.0000
132 L A 0.6819
133 G A -0.8503
134 Y A -0.3949
135 Q A -1.2620
136 M A -0.7112
137 N A -1.3551
138 T A -0.8333
139 S A -0.4122
140 S A -0.1614
141 W A 0.1727
142 P A 0.4643
143 M A 1.1046
144 F A 0.6561
145 L A 0.5241
146 L A 0.7078
147 E A -1.1097
148 T A -0.5920
149 L A -0.6527
150 N A -1.7910
151 G A -1.6268
152 S A -1.5483
153 E A -1.8686
154 M A -0.3482
155 A A 0.0000
156 S A -0.3238
157 A A 0.0149
158 T A -0.4923
159 L A -0.4360
160 F A -0.6459
161 K A -1.3691
162 K A -2.3570
163 E A -1.9227
164 P A 0.0000
165 P A -1.5244
166 K A -1.9792
167 P A -1.2232
168 P A -0.2555
169 L A 0.1278
170 N A -1.7548
171 N A -1.7352
172 F A 0.0000
173 K A -1.5789
174 V A -0.1271
175 G A 0.1168
176 M A 0.0000
177 K A 0.0000
178 L A 0.0000
179 E A 0.0000
180 A A 0.0000
181 I A 0.0000
182 D A 0.0000
183 K A -2.7134
184 K A -2.5328
185 N A -1.4759
186 P A -1.1554
187 Y A 0.1529
188 L A 0.0000
189 I A 0.0000
190 C A 0.0000
191 P A 0.0000
192 A A 0.0000
193 T A -0.1107
194 I A 0.0000
195 G A -0.4809
196 D A -1.2757
197 V A -2.0807
198 K A -3.0849
199 G A -2.4289
200 D A -3.1918
201 E A -3.1608
202 V A 0.0000
203 H A -0.7696
204 I A 0.0000
205 T A -0.4023
206 F A 0.0000
207 D A -0.4030
208 G A -0.1722
209 W A -0.1263
210 S A -0.4180
211 G A -0.5476
212 A A -0.3699
213 F A -0.7170
214 D A -0.7498
215 Y A 0.0000
216 W A -0.2429
217 C A -1.1654
218 K A -2.7832
219 Y A 0.0000
220 D A -1.8510
221 S A -1.4514
222 R A -1.2286
223 D A -1.8320
224 I A 0.0000
225 F A 0.0000
226 P A 0.0000
227 A A -0.2517
228 G A -0.5301
229 W A 0.0000
230 C A 0.0000
231 R A -1.1550
232 L A 0.3892
233 T A 0.4416
234 G A -0.4190
235 D A 0.3019
236 V A 1.3342
237 L A 0.6384
238 Q A 0.2837
239 P A -0.1608
240 P A -0.0707
241 G A -0.0348
242 T A -0.0082
30 V T 0.9051
31 H T -0.5335
32 R T -1.1582
33 L T 0.4656
34 L T 0.1657
35 R T -1.4339
36 K T -1.2006
37 G T -0.8674
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Laboratory of Theory of Biopolymers 2018