| Chain sequence(s) |
A: DIVMTQSPDSLAVSLGERATINCKASQNVGSNVDWYQQKPGQPPQLLIYKATNRNTGVPDRFTGSGSGTDFTLTISSLQAEDVAVYYCMQSNSYPYTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVQLVQSGGGLVQPGGSLRLSCAASGFTFSNYDMAWVRQAPGKGLEWVASISSTYGYTYYRDSMKGRFTISRDNAKSSLYLQMNSLRAEDTAVYYCARHDPPYYGPFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:31)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:31)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:31)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:31)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:32)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:34)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -0.9629 | |
| 2 | I | A | -0.2200 | |
| 3 | V | A | 0.9610 | |
| 4 | M | A | 0.0000 | |
| 5 | T | A | -0.6244 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -1.2904 | |
| 8 | P | A | -1.2151 | |
| 9 | D | A | -2.1282 | |
| 10 | S | A | -1.2258 | |
| 11 | L | A | -0.4414 | |
| 12 | A | A | -0.4837 | |
| 13 | V | A | -0.8877 | |
| 14 | S | A | -1.1310 | |
| 15 | L | A | -0.3200 | |
| 16 | G | A | -1.2998 | |
| 17 | E | A | -2.7813 | |
| 18 | R | A | -2.7670 | |
| 19 | A | A | 0.0000 | |
| 20 | T | A | -0.5468 | |
| 21 | I | A | 0.0000 | |
| 22 | N | A | -1.3327 | |
| 23 | C | A | 0.0000 | |
| 24 | K | A | -2.1161 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -1.0798 | |
| 27 | Q | A | -1.9990 | |
| 28 | N | A | -2.4144 | |
| 29 | V | A | 0.0000 | |
| 30 | G | A | -1.4745 | |
| 30A | S | A | -1.0965 | |
| 30B | N | A | -0.6303 | |
| 30C | V | A | 0.0000 | |
| 30D | D | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | 0.0000 | |
| 38 | Q | A | -0.5235 | |
| 39 | K | A | -0.8449 | |
| 40 | P | A | -0.8721 | |
| 41 | G | A | -1.1953 | |
| 42 | Q | A | -1.5455 | |
| 43 | P | A | 0.0000 | |
| 44 | P | A | 0.0000 | |
| 45 | Q | A | -0.9577 | |
| 46 | L | A | -0.1822 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | -0.3410 | |
| 50 | K | A | -1.0186 | |
| 51 | A | A | 0.0000 | |
| 52 | T | A | -1.0463 | |
| 53 | N | A | -1.3950 | |
| 54 | R | A | -1.8349 | |
| 55 | N | A | -0.8271 | |
| 56 | T | A | -0.5112 | |
| 57 | G | A | -0.8769 | |
| 58 | V | A | -1.0064 | |
| 59 | P | A | -1.3040 | |
| 60 | D | A | -2.1490 | |
| 61 | R | A | -1.4741 | |
| 62 | F | A | 0.0000 | |
| 63 | T | A | -0.8172 | |
| 64 | G | A | 0.0000 | |
| 65 | S | A | -0.7797 | |
| 66 | G | A | -1.3123 | |
| 67 | S | A | -1.3985 | |
| 68 | G | A | -1.6787 | |
| 69 | T | A | -2.0388 | |
| 70 | D | A | -2.2555 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.8508 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.5711 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.7699 | |
| 77 | S | A | -1.6844 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -1.1617 | |
| 80 | A | A | -0.4497 | |
| 81 | E | A | -1.0688 | |
| 82 | D | A | 0.0000 | |
| 83 | V | A | -0.1274 | |
| 84 | A | A | 0.0000 | |
| 85 | V | A | 0.0383 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | M | A | 0.0416 | |
| 90 | Q | A | 0.0000 | |
| 91 | S | A | -0.3802 | |
| 92 | N | A | -1.0306 | |
| 93 | S | A | -0.2411 | |
| 93A | Y | A | 0.6443 | |
| 95 | P | A | -0.0101 | |
| 96 | Y | A | 0.0000 | |
| 97 | T | A | 0.0831 | |
| 98 | F | A | 0.2831 | |
| 99 | G | A | 0.0000 | |
| 100 | Q | A | -1.3356 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.4803 | |
| 104 | L | A | 0.0000 | |
| 105 | E | A | 0.0000 | |
| 106 | I | A | -0.5852 | |
| 107 | K | A | -1.5184 | |
| 108 | R | A | -1.3973 | |
| 109 | T | A | -0.2086 | |
| 110 | V | A | 0.9739 | |
| 111 | A | A | 0.3635 | |
| 112 | A | A | -0.0380 | |
| 113 | P | A | 0.0000 | |
| 114 | S | A | -0.1369 | |
| 115 | V | A | 0.0000 | |
| 116 | F | A | -0.0279 | |
| 117 | I | A | 0.0000 | |
| 118 | F | A | 0.0000 | |
| 119 | P | A | 0.0000 | |
| 120 | P | A | 0.0000 | |
| 121 | S | A | 0.0000 | |
| 122 | D | A | -2.5578 | |
| 123 | E | A | -2.0713 | |
| 124 | Q | A | 0.0000 | |
| 125 | L | A | -1.9310 | |
| 126 | K | A | -2.5397 | |
| 127 | S | A | -1.5695 | |
| 128 | G | A | -1.3499 | |
| 129 | T | A | -0.9739 | |
| 130 | A | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | C | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | L | A | 0.0000 | |
| 137 | N | A | 0.0000 | |
| 138 | N | A | -1.0495 | |
| 139 | F | A | 0.0000 | |
| 140 | Y | A | 0.0000 | |
| 141 | P | A | 0.0000 | |
| 142 | R | A | -1.5940 | |
| 143 | E | A | -2.4530 | |
| 144 | A | A | -1.8350 | |
| 145 | K | A | -2.3502 | |
| 146 | V | A | 0.0000 | |
| 147 | Q | A | -0.8486 | |
| 148 | W | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | V | A | 0.0000 | |
| 151 | D | A | -2.0777 | |
| 152 | N | A | -1.4691 | |
| 153 | A | A | -0.1195 | |
| 154 | L | A | 0.8477 | |
| 155 | Q | A | 0.0091 | |
| 156 | S | A | -0.5148 | |
| 157 | G | A | -0.9786 | |
| 158 | N | A | -0.8881 | |
| 159 | S | A | -1.0251 | |
| 160 | Q | A | -1.0676 | |
| 161 | E | A | -1.4282 | |
| 162 | S | A | 0.0000 | |
| 163 | V | A | -0.3081 | |
| 164 | T | A | -0.8852 | |
| 165 | E | A | -1.8063 | |
| 166 | Q | A | -1.8656 | |
| 167 | D | A | -2.6475 | |
| 168 | S | A | -2.0704 | |
| 169 | K | A | -2.8133 | |
| 170 | D | A | -2.8223 | |
| 171 | S | A | -2.6116 | |
| 172 | T | A | 0.0000 | |
| 173 | Y | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | L | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | S | A | 0.0000 | |
| 178 | T | A | -0.5111 | |
| 179 | L | A | 0.0000 | |
| 180 | T | A | -0.2852 | |
| 181 | L | A | -0.0965 | |
| 182 | S | A | -0.7803 | |
| 183 | K | A | -1.8143 | |
| 184 | A | A | -1.3386 | |
| 185 | D | A | -1.6964 | |
| 186 | Y | A | -1.7455 | |
| 187 | E | A | -2.7230 | |
| 188 | K | A | -3.0595 | |
| 189 | H | A | -2.7645 | |
| 190 | K | A | -3.3755 | |
| 191 | V | A | -1.9945 | |
| 192 | Y | A | 0.0000 | |
| 193 | A | A | 0.0000 | |
| 194 | C | A | 0.0000 | |
| 195 | E | A | -0.5974 | |
| 196 | V | A | 0.0000 | |
| 197 | T | A | -1.1615 | |
| 198 | H | A | 0.0000 | |
| 199 | Q | A | -1.7169 | |
| 200 | G | A | -0.6665 | |
| 201 | L | A | -0.4635 | |
| 202 | S | A | -0.5047 | |
| 203 | S | A | -0.4529 | |
| 204 | P | A | -0.4834 | |
| 205 | V | A | -0.0765 | |
| 206 | T | A | -0.4496 | |
| 207 | K | A | -0.7184 | |
| 208 | S | A | -0.6626 | |
| 209 | F | A | 0.0000 | |
| 210 | N | A | -2.2958 | |
| 211 | R | A | -3.0548 | |
| 212 | G | A | -2.4622 | |
| 213 | E | A | -2.7227 | |
| 214 | C | A | -1.5510 | |
| 1 | E | A | -1.9548 | |
| 2 | V | A | -0.7710 | |
| 3 | Q | A | -0.7340 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2131 | |
| 6 | Q | A | 0.4394 | |
| 7 | S | A | -0.1767 | |
| 8 | G | A | -0.8330 | |
| 9 | G | A | -0.1770 | |
| 10 | G | A | 0.1591 | |
| 11 | L | A | 0.5468 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.6101 | |
| 14 | P | A | -1.5853 | |
| 15 | G | A | -1.4980 | |
| 16 | G | A | -1.2575 | |
| 17 | S | A | -1.2758 | |
| 18 | L | A | -1.0625 | |
| 19 | R | A | -2.0321 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4225 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | 0.1316 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6432 | |
| 26 | G | A | -1.0397 | |
| 27 | F | A | -0.4627 | |
| 28 | T | A | -0.5373 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.3256 | |
| 30A | N | A | -1.4504 | |
| 31 | Y | A | -0.5292 | |
| 32 | D | A | -0.4001 | |
| 33 | M | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.4985 | |
| 39 | A | A | -0.8744 | |
| 40 | P | A | -1.1016 | |
| 41 | G | A | -1.4701 | |
| 42 | K | A | -2.2420 | |
| 43 | G | A | -1.2718 | |
| 44 | L | A | -0.5800 | |
| 45 | E | A | -0.7696 | |
| 46 | W | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 51A | S | A | -0.2343 | |
| 51B | T | A | 0.2532 | |
| 51C | Y | A | 1.4070 | |
| 54 | G | A | 0.6903 | |
| 55 | Y | A | 1.6494 | |
| 56 | T | A | 1.1572 | |
| 57 | Y | A | 1.0878 | |
| 58 | Y | A | -0.4657 | |
| 59 | R | A | -1.3047 | |
| 60 | D | A | -2.5111 | |
| 61 | S | A | -1.7483 | |
| 62 | M | A | 0.0000 | |
| 63 | K | A | -2.5458 | |
| 64 | G | A | -1.7146 | |
| 65 | R | A | -1.4811 | |
| 66 | F | A | 0.0000 | |
| 67 | T | A | -0.6130 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.1623 | |
| 70 | R | A | -0.9180 | |
| 71 | D | A | -1.4528 | |
| 72 | N | A | -2.0511 | |
| 73 | A | A | -1.4517 | |
| 74 | K | A | -2.1749 | |
| 75 | S | A | -1.4186 | |
| 76 | S | A | 0.0000 | |
| 77 | L | A | 0.0000 | |
| 78 | Y | A | -0.4495 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -1.0796 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.2921 | |
| 83 | S | A | -1.2496 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -2.2083 | |
| 86 | A | A | -1.5088 | |
| 87 | E | A | -1.8361 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.3211 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.8594 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | R | A | 0.0000 | |
| 102A | H | A | 0.0845 | |
| 102B | D | A | 0.1585 | |
| 102C | P | A | 0.3196 | |
| 102D | P | A | 0.4937 | |
| 102E | Y | A | 1.5480 | |
| 102F | Y | A | 1.8935 | |
| 102G | G | A | 1.0090 | |
| 102H | P | A | 0.8034 | |
| 102I | F | A | 1.7258 | |
| 103 | A | A | 0.7934 | |
| 104 | Y | A | 0.3437 | |
| 105 | W | A | 0.0000 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -1.1956 | |
| 108 | G | A | -0.2801 | |
| 109 | T | A | 0.4764 | |
| 110 | L | A | 1.3994 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.0666 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7361 | |
| 115 | S | A | -0.5758 | |
| 121 | A | A | -0.4019 | |
| 122 | S | A | -0.4659 | |
| 123 | T | A | -0.5352 | |
| 124 | K | A | -0.9609 | |
| 125 | G | A | -1.2634 | |
| 126 | P | A | 0.0000 | |
| 127 | S | A | -0.1958 | |
| 128 | V | A | -0.1178 | |
| 129 | F | A | -0.4134 | |
| 130 | P | A | -0.6879 | |
| 131 | L | A | 0.0000 | |
| 132 | A | A | 0.0000 | |
| 133 | P | A | 0.0000 | |
| 134 | S | A | -0.6035 | |
| 135 | S | A | -0.6917 | |
| 136 | K | A | -0.5698 | |
| 137 | S | A | -0.7187 | |
| 138 | T | A | -0.7608 | |
| 139 | S | A | -0.7275 | |
| 140 | G | A | -0.8411 | |
| 141 | G | A | -0.8385 | |
| 142 | T | A | -0.5959 | |
| 143 | A | A | 0.0000 | |
| 144 | A | A | 0.0000 | |
| 145 | L | A | 0.0000 | |
| 146 | G | A | 0.0000 | |
| 147 | C | A | 0.0000 | |
| 148 | L | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | K | A | 0.0000 | |
| 151 | D | A | -0.3108 | |
| 152 | Y | A | 0.0000 | |
| 153 | F | A | 0.0000 | |
| 154 | P | A | -0.5280 | |
| 155 | E | A | -0.7905 | |
| 156 | P | A | -1.0492 | |
| 157 | V | A | 0.0000 | |
| 158 | T | A | -0.7361 | |
| 159 | V | A | -0.4010 | |
| 160 | S | A | -0.3315 | |
| 161 | W | A | 0.0000 | |
| 162 | N | A | -0.7459 | |
| 163 | S | A | -0.6754 | |
| 164 | G | A | -0.3977 | |
| 165 | A | A | -0.1792 | |
| 166 | L | A | -0.0151 | |
| 167 | T | A | -0.1764 | |
| 168 | S | A | -0.1837 | |
| 169 | G | A | -0.2664 | |
| 170 | V | A | 0.1735 | |
| 171 | H | A | 0.0235 | |
| 172 | T | A | 0.0300 | |
| 173 | F | A | 0.0000 | |
| 174 | P | A | -0.4168 | |
| 175 | A | A | 0.0595 | |
| 176 | V | A | 0.3899 | |
| 177 | L | A | 1.0795 | |
| 178 | Q | A | 0.1364 | |
| 179 | S | A | -0.2378 | |
| 180 | S | A | -0.2113 | |
| 181 | G | A | -0.0533 | |
| 182 | L | A | 0.0326 | |
| 183 | Y | A | 0.0000 | |
| 184 | S | A | 0.0000 | |
| 185 | L | A | 0.0000 | |
| 186 | S | A | 0.0000 | |
| 187 | S | A | 0.0000 | |
| 188 | V | A | 0.0000 | |
| 189 | V | A | 0.0000 | |
| 190 | T | A | -0.1746 | |
| 191 | V | A | 0.0000 | |
| 192 | P | A | -0.5724 | |
| 193 | S | A | 0.0000 | |
| 194 | S | A | -0.8123 | |
| 195 | S | A | -0.6623 | |
| 196 | L | A | -0.7361 | |
| 197 | G | A | -0.8855 | |
| 198 | T | A | -0.7876 | |
| 199 | Q | A | -1.1397 | |
| 200 | T | A | -0.9823 | |
| 201 | Y | A | 0.0000 | |
| 202 | I | A | -0.8406 | |
| 203 | C | A | 0.0000 | |
| 204 | N | A | 0.0000 | |
| 205 | V | A | 0.0000 | |
| 206 | N | A | -2.0877 | |
| 207 | H | A | 0.0000 | |
| 208 | K | A | -2.8386 | |
| 209 | P | A | -1.6632 | |
| 210 | S | A | -1.8604 | |
| 211 | N | A | -2.5569 | |
| 212 | T | A | -2.0757 | |
| 213 | K | A | -2.7403 | |
| 214 | V | A | -1.4153 | |
| 215 | D | A | -2.4422 | |
| 216 | K | A | -1.8912 | |
| 217 | R | A | -2.2163 | |
| 218 | V | A | 0.0000 | |
| 219 | E | A | -1.2465 | |
| 220 | P | A | -0.7406 | |
| 221 | K | A | -0.8767 | |
| 222 | S | A | -1.2264 | |
| 223 | C | A | -1.5900 | |
| 224 | D | A | -2.5325 | |
| 225 | K | A | -2.7633 | |
| 226 | T | A | -1.4344 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine