Project name: PARTIALLYUNFOLDED

Status: done

Started: 2024-04-23 06:23:05
Settings
Chain sequence(s) A: GIVEQCCTSICSLYQLENYCN
B: FVNQHLCGSHLVEALYLVCGERGFFYTPKT
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:21)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-2.5826
Maximal score value
2.478
Average score
-0.0929
Total score value
-4.7397

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.2970
2 I A 1.6990
3 V A 1.1280
4 E A -0.7022
5 Q A -0.7055
6 C A 0.0000
7 C A -0.1331
8 T A -0.1051
9 S A 0.1080
10 I A 1.5647
11 C A 0.0000
12 S A 0.9973
13 L A 1.6530
14 Y A 1.1691
15 Q A -0.4736
16 L A -0.8383
17 E A -1.9066
18 N A -2.2817
19 Y A -0.4904
20 C A -0.4880
21 N A -1.7229
1 F B 1.7694
2 V B 0.6059
3 N B -0.6713
4 Q B -1.2324
5 H B 0.0000
6 L B 0.0589
7 C B -0.2732
8 G B -0.6042
9 S B -0.7167
10 H B -1.1007
11 L B -0.2414
12 V B 0.0671
13 E B -0.8157
14 A B 0.4834
15 L B 0.0000
16 Y B 0.3227
17 L B 1.6571
18 V B 0.8561
19 C B -0.4541
20 G B -0.6521
21 E B -2.3296
22 R B -2.5826
23 G B -1.0358
24 F B 0.8418
25 F B 2.4780
26 Y B 1.7946
27 T B 0.6661
28 P B 0.0247
29 K B -1.3771
30 T B -1.0473
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Laboratory of Theory of Biopolymers 2018