Project name: PKARIbFLwithCa [mutate: LR48B]

Status: done

Started: 2024-04-25 15:53:19
Settings
Chain sequence(s) A: GSEQESVKEFLAKAKEDFLKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSINEKCGKEFTEF
B: SLKGCELYVQLHGIQQVLKDCIVHLCISKPERPMKFLREHFEKLEKESPTPPNPVVKARRRRGGVSAEVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGEWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFISLT
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LR48B
Energy difference between WT (input) and mutated protein (by FoldX) 0.0329143 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:03)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:03)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:03)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:03)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:03)
[INFO]       FoldX:    Building mutant model                                                       (00:06:05)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:06:14)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:10:23)
Show buried residues

Minimal score value
-4.158
Maximal score value
2.6566
Average score
-0.8906
Total score value
-611.8507

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
9 G A -1.3253
10 S A -2.1600
11 E A -3.0672
12 Q A -3.0783
13 E A -3.8129
14 S A -2.3827
15 V A -1.6771
16 K A -3.1246
17 E A -3.0554
18 F A -1.4925
19 L A -1.4691
20 A A -2.2544
21 K A -3.1966
22 A A -2.2492
23 K A -2.8356
24 E A -3.8069
25 D A -3.9765
26 F A 0.0000
27 L A -2.5019
28 K A -3.6303
29 K A -3.2290
30 W A -2.4017
31 E A -2.6751
32 T A -1.9975
33 P A -1.8111
34 S A -1.0437
35 Q A -1.4818
36 N A -1.7256
37 T A -1.0389
38 A A -1.2970
39 Q A -1.9858
40 L A 0.0000
41 D A -2.9699
42 Q A -3.2664
43 F A 0.0000
44 D A -3.4869
45 R A -2.3931
46 I A -1.4784
47 K A -2.9774
48 T A 0.0000
49 L A 0.0000
50 G A -1.3649
51 T A -0.6654
52 G A -0.7437
53 S A -0.2693
54 F A -0.0243
55 G A -0.3771
56 R A -0.3991
57 V A -0.2183
58 M A 0.0000
59 L A 0.0000
60 V A 0.0000
61 K A -3.0732
62 H A -3.4328
63 K A -4.1580
64 E A -3.2989
65 S A -2.3042
66 G A -2.5708
67 N A -2.4095
68 H A -1.6191
69 Y A 0.0000
70 A A 0.0000
71 M A 0.0000
72 K A -0.1112
73 I A -0.0125
74 L A 0.0000
75 D A -1.0134
76 K A 0.0000
77 Q A -1.2635
78 K A -1.4331
79 V A 0.0000
80 V A -1.2372
81 K A -2.0173
82 L A -1.0914
83 K A -2.0962
84 Q A 0.0000
85 I A -0.9404
86 E A -1.3161
87 H A 0.0000
88 T A 0.0000
89 L A -0.8789
90 N A -0.8304
91 E A 0.0000
92 K A 0.0000
93 R A -1.5981
94 I A 0.0000
95 L A -0.8328
96 Q A -1.0743
97 A A 0.0000
98 V A -1.2351
99 N A -1.8393
100 F A 0.0000
101 P A -0.7090
102 F A 0.0000
103 L A 0.0000
104 V A 0.0000
105 K A -2.0225
106 L A -1.0257
107 E A -0.9668
108 F A -0.6133
109 S A 0.0000
110 F A 0.0000
111 K A -1.2762
112 D A -1.4189
113 N A -1.5085
114 S A 0.0000
115 N A 0.0000
116 L A 0.0000
117 Y A 0.0000
118 M A 0.0000
119 V A 0.0000
120 M A -0.6345
121 E A -0.9415
122 Y A -0.4910
123 V A 0.0000
124 A A 0.0000
125 G A -0.5596
126 G A 0.0000
127 E A 0.0000
128 M A 0.0000
129 F A 0.0000
130 S A -1.2172
131 H A -0.7587
132 L A 0.0000
133 R A -1.9013
134 R A -2.2133
135 I A -0.9105
136 G A -1.2658
137 R A -0.7144
138 F A 0.0000
139 S A -0.6979
140 E A -0.8234
141 P A -0.8448
142 H A -0.8885
143 A A 0.0000
144 R A -0.6928
145 F A 0.0000
146 Y A 0.0000
147 A A 0.0000
148 A A 0.0000
149 Q A 0.0000
150 I A 0.0000
151 V A 0.0000
152 L A 0.2729
153 T A 0.0000
154 F A 0.0000
155 E A -0.5429
156 Y A 0.0000
157 L A 0.0000
158 H A 0.0000
159 S A -0.4328
160 L A 0.0000
161 D A -1.2658
162 L A 0.0000
163 I A 0.0000
164 Y A 0.0000
165 R A 0.0000
166 D A 0.0000
167 L A 0.0000
168 K A 0.0000
169 P A 0.0000
170 E A -0.5595
171 N A 0.0000
172 L A 0.0000
173 L A 0.0000
174 I A 0.0000
175 D A -0.8184
176 Q A -1.6217
177 Q A -1.8753
178 G A 0.0000
179 Y A 0.0000
180 I A 0.0000
181 Q A 0.0000
182 V A 0.0000
183 T A -0.4698
184 D A -0.6190
185 F A 0.0000
186 G A -0.3552
187 F A 0.0000
188 A A 0.0000
189 K A -1.1287
190 R A -1.5673
191 V A -1.5791
192 K A -2.1708
193 G A -1.4140
194 R A -1.5196
195 T A 0.0000
196 W A 0.0000
197 T A 0.0000
198 L A 0.0000
199 C A 0.0000
200 G A 0.0000
201 T A 0.0000
202 P A 0.2327
203 E A 0.0000
204 Y A 0.0000
205 L A 0.0000
206 A A 0.0000
207 P A 0.0000
208 E A -0.0821
209 I A 0.0000
210 I A 0.0000
211 L A 0.1273
212 S A 0.0000
213 K A -0.3928
214 G A 0.0000
215 Y A 0.0000
216 N A -1.2688
217 K A -1.5626
218 A A 0.0000
219 V A 0.0000
220 D A 0.0000
221 W A 0.0000
222 W A 0.0000
223 A A 0.0000
224 L A 0.0000
225 G A 0.0000
226 V A 0.0000
227 L A 0.0000
228 I A 0.0000
229 Y A 0.0000
230 E A 0.0000
231 M A 0.0000
232 A A 0.0000
233 A A 0.0000
234 G A -0.4263
235 Y A 0.0000
236 P A 0.0000
237 P A -0.0775
238 F A 0.0000
239 F A 0.8330
240 A A -0.8392
241 D A -2.0836
242 Q A -1.8402
243 P A -1.1781
244 I A -1.2368
245 Q A -1.7265
246 I A 0.0000
247 Y A 0.0000
248 E A -2.2605
249 K A -1.7610
250 I A 0.0000
251 V A -0.7504
252 S A -1.0612
253 G A -1.4291
254 K A -2.0082
255 V A -1.0107
256 R A -1.3930
257 F A -0.7350
258 P A 0.0000
259 S A -0.2722
260 H A -0.3454
261 F A 0.0000
262 S A -0.7880
263 S A -1.0821
264 D A -1.6815
265 L A 0.0000
266 K A -1.7760
267 D A -2.7889
268 L A 0.0000
269 L A 0.0000
270 R A -2.8124
271 N A -2.0010
272 L A 0.0000
273 L A -0.8553
274 Q A -1.0438
275 V A -0.2377
276 D A -0.6542
277 L A -0.4810
278 T A 0.0000
279 K A -1.9178
280 R A 0.0000
281 F A -1.0471
282 G A 0.0000
283 N A -1.3903
284 L A -1.8812
285 K A -2.5892
286 N A -1.9884
287 G A -1.4921
288 V A 0.0000
289 N A -2.3098
290 D A -1.9753
291 I A 0.0000
292 K A -1.8433
293 N A -2.3508
294 H A 0.0000
295 K A -2.3703
296 W A 0.0000
297 F A 0.0000
298 A A -1.2177
299 T A -0.7938
300 T A -0.9683
301 D A -1.1766
302 W A 0.1683
303 I A 1.0546
304 A A 0.0000
305 I A 0.0000
306 Y A -0.1033
307 Q A -1.2246
308 R A -1.8093
309 K A -2.5131
310 V A -1.7012
311 E A -2.1131
312 A A -1.1823
313 P A -0.3885
314 F A 0.1000
315 I A 0.2681
316 P A 0.0000
317 K A -1.7110
318 F A -1.0646
319 K A -2.0225
320 G A -1.2355
321 P A -0.9820
322 G A -1.0007
323 D A -0.9755
324 T A -1.1844
325 S A -1.2951
326 N A -1.0631
327 F A -1.1829
328 D A -2.5689
329 D A -3.2738
330 Y A -2.7759
331 E A -3.5134
332 E A -3.8242
333 E A -4.0433
334 E A -3.6984
335 I A -2.1009
336 R A -2.0372
337 V A -0.2364
338 S A -0.0977
339 I A 0.8500
340 N A -1.5290
341 E A -2.6756
342 K A -2.6161
343 C A -1.9711
344 G A -2.5370
345 K A -2.6126
346 E A -1.8380
347 F A 0.0000
348 T A -1.9248
349 E A -2.4212
350 F A 0.0000
12 S B 0.0802
13 L B 0.5922
14 K B -1.0535
15 G B -0.6815
16 C B -0.0859
17 E B -0.5166
18 L B 1.6486
19 Y B 2.3627
20 V B 2.4526
21 Q B 1.0103
22 L B 1.8297
23 H B 0.4147
24 G B 0.9297
25 I B 1.0577
26 Q B -0.4232
27 Q B 0.1127
28 V B 1.8302
29 L B 1.1642
30 K B -1.1487
31 D B -1.2942
32 C B 0.7281
33 I B 2.6566
34 V B 2.4278
35 H B 0.5018
36 L B 0.4044
37 C B 0.0000
38 I B -0.9344
39 S B -1.1599
40 K B -2.4362
41 P B -2.0611
42 E B -2.6086
43 R B -2.1213
44 P B -1.3849
45 M B -1.0349
46 K B -2.5266
47 F B -1.8374
48 R B -3.1434 mutated: LR48B
49 R B -3.4686
50 E B -3.8629
51 H B -2.3784
52 F B -0.5692
53 E B -2.2510
54 K B -2.2079
55 L B -0.5414
56 E B -1.4919
57 K B -2.7479
58 E B -2.3483
81 S B -0.4250
82 P B -0.4518
83 T B -0.5827
84 P B -0.8175
85 P B -1.0667
86 N B -0.9237
87 P B 0.1827
88 V B 1.6682
89 V B 1.0633
90 K B -1.8127
91 A B -1.6311
92 R B -3.4999
93 R B -3.4071
94 R B -2.4298
95 R B -1.5354
96 G B -0.8843
97 G B 0.0000
98 V B 0.6792
99 S B 0.1289
100 A B 0.0000
101 E B -0.8800
102 V B -0.3520
103 Y B 0.0000
104 T B -1.3733
105 E B -2.4317
106 E B -2.3233
107 D B -1.3899
108 A B 0.0000
109 V B 0.4525
110 S B 0.0564
111 Y B 0.7374
112 V B 1.6414
113 R B 0.1223
114 K B -0.1053
115 V B 1.1836
116 I B 0.5278
117 P B -0.0705
118 K B -0.9657
119 D B -1.8286
120 Y B -0.3917
121 K B -1.6522
122 T B -0.9897
123 M B -0.6622
124 T B -0.6973
125 A B -0.7904
126 L B 0.0000
127 A B -1.0640
128 K B -2.0466
129 A B -1.5477
130 I B 0.0000
131 S B -1.5547
132 K B -2.0785
133 N B -1.4624
134 V B 0.0000
135 L B 0.0000
136 F B 0.0000
137 A B -0.5940
138 H B -0.5365
139 L B 0.0000
140 D B -1.7027
141 D B -2.7517
142 N B -2.1472
143 E B 0.0000
144 R B -1.6282
145 S B -1.1352
146 D B -1.0381
147 I B 0.0000
148 F B 0.0000
149 D B 0.0349
150 A B 0.0000
151 M B 0.0000
152 F B 0.4481
153 P B -0.1092
154 V B -0.2527
155 T B -0.6659
156 H B -0.3098
157 I B 0.3097
158 A B -0.8185
159 G B -1.0574
160 E B -0.8750
161 T B -0.7363
162 V B -0.1461
163 I B -1.3396
164 Q B -2.0427
165 Q B -2.0763
166 G B -2.0329
167 N B -2.9505
168 E B -3.2708
169 G B 0.0000
170 D B -2.7241
171 N B -1.4598
172 F B 0.0000
173 Y B 0.0586
174 V B 0.0000
175 V B 0.0000
176 D B -1.9478
177 Q B -2.6914
178 G B -2.1950
179 E B -2.2548
180 V B 0.0000
181 D B -0.3563
182 V B 0.3019
183 Y B -0.1621
184 V B -0.4513
185 N B -1.6584
186 G B -1.6029
187 E B -1.4557
188 W B 0.4873
189 V B 1.3283
190 T B 0.7005
191 N B -0.1197
192 I B -0.4692
193 S B -1.5997
194 E B -2.7688
195 G B -1.9505
196 G B -0.9882
197 S B -0.3305
198 F B 0.1879
199 G B -0.2461
200 E B -0.2622
201 L B -0.3007
202 A B 0.0000
203 L B 0.0000
204 I B 0.0000
205 Y B 0.0000
206 G B -1.4316
207 T B -1.3257
208 P B -2.1433
209 R B 0.0000
210 A B -1.0126
211 A B -0.7434
212 T B -1.2022
213 V B 0.0000
214 K B -1.0351
215 A B 0.0000
216 K B -1.7087
217 T B -1.6040
218 D B -1.7629
219 L B 0.0000
220 K B -2.0774
221 L B 0.0000
222 W B 0.0000
223 G B 0.0000
224 I B 0.0000
225 D B -1.0132
226 R B 0.0000
227 D B -1.0824
228 S B -0.5535
229 Y B 0.0000
230 R B 0.0000
231 R B -0.1682
232 I B 0.0000
233 L B 0.0000
234 M B 0.0000
235 G B -0.8122
236 S B -0.9963
237 T B 0.0000
238 L B 0.0000
239 R B -2.3209
240 K B -2.2854
241 R B -2.0520
242 K B -2.5468
243 M B -1.7993
244 Y B 0.0000
245 E B -2.4392
246 E B -2.7854
247 F B -1.8284
248 L B 0.0000
249 S B -2.5334
250 K B -2.6815
251 V B 0.0000
252 S B -1.1634
253 I B 0.0000
254 L B 0.0000
255 E B -2.5877
256 S B -2.4037
257 L B -1.6660
258 E B -2.2435
259 K B -2.1392
260 W B -0.7834
261 E B -0.9976
262 R B -1.5863
263 L B 0.0000
264 T B -0.5936
265 V B 0.0000
266 A B 0.0000
267 D B -1.1894
268 A B 0.0000
269 L B -0.9737
270 E B -1.6716
271 P B -0.8919
272 V B -0.0508
273 Q B -1.3090
274 F B -2.1870
275 E B -3.7611
276 D B -3.8863
277 G B -2.9239
278 E B -3.1121
279 K B -2.1112
280 I B -0.5174
281 V B 0.0000
282 V B -0.1676
283 Q B -0.9014
284 G B -1.4580
285 E B -1.8475
286 P B -1.8396
287 G B 0.0000
288 D B -1.5710
289 D B -1.1863
290 F B 0.0000
291 Y B 0.0000
292 I B 0.0000
293 I B 0.0000
294 T B -1.1498
295 E B -1.8447
296 G B -1.7815
297 T B -1.7197
298 A B 0.0000
299 S B 0.0000
300 V B -0.5175
301 L B -0.4923
302 Q B -1.2528
303 R B -2.8885
304 R B -3.1613
305 S B -2.6070
306 P B -2.3281
307 N B -3.0112
308 E B -3.8508
309 E B -3.2327
310 Y B -1.4913
311 V B -0.5853
312 E B -0.7846
313 V B 0.7036
314 G B -0.5500
315 R B -2.0475
316 L B -1.1543
317 G B -1.2443
318 P B -1.1861
319 S B -1.1781
320 D B -1.4151
321 Y B -0.3791
322 F B 0.0401
323 G B -0.2915
324 E B -0.1954
325 I B 0.0486
326 A B 0.0000
327 L B 0.0000
328 L B -0.1474
329 L B -0.1519
330 N B -1.6056
331 R B -1.8444
332 P B -1.7546
333 R B -1.3399
334 A B -0.8411
335 A B -0.5322
336 T B 0.0000
337 V B 0.0000
338 V B 0.0000
339 A B 0.0000
340 R B -3.3295
341 G B 0.0000
342 P B -2.5356
343 L B 0.0000
344 K B -1.3062
345 C B 0.0000
346 V B 0.0000
347 K B -0.7754
348 L B 0.0000
349 D B -1.2446
350 R B -1.3730
351 P B -1.1734
352 R B -1.5533
353 F B 0.0000
354 E B -1.9683
355 R B -2.8805
356 V B 0.0000
357 L B -1.2766
358 G B -1.6915
359 P B -1.3622
360 C B 0.0000
361 S B -1.4916
362 E B -2.7291
363 I B 0.0000
364 L B 0.0000
365 K B -2.8067
366 R B -3.1289
367 N B -2.1751
368 I B -0.5224
369 Q B -1.2995
370 R B -1.2448
371 Y B -1.1436
372 N B -0.3331
373 S B 0.3121
374 F B 0.9589
375 I B 1.5673
376 S B 0.9345
377 L B 1.7929
378 T B 1.0506
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Laboratory of Theory of Biopolymers 2018