Project name: Human Epidermal Growth Factor

Status: done

Started: 2020-11-19 00:05:33
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Chain sequence(s) A: CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDL
B: CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRDLKWW
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:01:06)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:01:06)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:01:06)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:01:06)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:06)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:50)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:01:50)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:52)
Show buried residues

Minimal score value
-2.2459
Maximal score value
2.6906
Average score
-0.0987
Total score value
-8.5854

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
6 C A 1.1120
7 P A 0.1647
8 L A 0.0820
9 S A -0.8138
10 H A -1.7634
11 D A -2.0043
12 G A -1.3553
13 Y A -0.1626
14 C A -0.6114
15 L A -0.5185
16 H A -0.4820
17 D A -1.2214
18 G A -0.0141
19 V A 1.0332
20 C A 0.0000
21 M A 0.8900
22 Y A 0.0748
23 I A -0.6343
24 E A -1.8868
25 A A -0.6581
26 L A -0.2552
27 D A -2.2245
28 K A -1.9029
29 Y A -0.5658
30 A A -0.3168
31 C A 0.0407
32 N A -0.3288
33 C A 0.4857
34 V A 1.3222
35 V A 1.7042
36 G A 1.0648
37 Y A 0.9035
38 I A 1.4677
39 G A -0.2444
40 E A -1.6630
41 R A -0.8203
42 C A 0.0000
43 Q A -0.0245
44 Y A 0.7843
45 R A 0.1821
46 D A -0.3576
47 L A 0.5438
6 C B 0.4049
7 P B 0.2081
8 L B 1.2670
9 S B -0.5807
10 H B -1.6064
11 D B -1.9134
12 G B -1.3966
13 Y B -0.8246
14 C B 0.0000
15 L B -0.6977
16 H B -0.6771
17 D B -1.3081
18 G B 0.2538
19 V B 1.3988
20 C B 1.3850
21 M B 1.3871
22 Y B 0.6186
23 I B -0.6031
24 E B -2.0264
25 A B -0.9228
26 L B -0.4339
27 D B -2.2459
28 K B -1.3327
29 Y B 0.8032
30 A B 0.3258
31 C B 0.4716
32 N B 0.5959
33 C B 0.7889
34 V B 1.7646
35 V B 2.6906
36 G B 0.0000
37 Y B 1.2282
38 I B 1.1962
39 G B -0.4108
40 E B -1.7636
41 R B -0.6957
42 C B 0.0000
43 Q B 0.0000
44 Y B 0.4828
45 R B 0.3049
46 D B 0.3600
47 L B -0.0211
48 K B -0.8628
49 W B 1.1292
50 W B 1.6469
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Laboratory of Theory of Biopolymers 2018