Project name: Marija

Status: done

Started: 2024-04-18 11:08:13
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Chain sequence(s) A: ALTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEE
C: ALTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
B: ALTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
D: ALTELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETECPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGVAAHKKSHEESHKE
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:07)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:07)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:07)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:09)
Show buried residues

Minimal score value
-4.9913
Maximal score value
1.2431
Average score
-1.1623
Total score value
-427.7085

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A 0.4335
2 L A 0.2777
3 T A -0.6924
4 E A -2.1123
5 L A 0.0000
6 E A -1.3706
7 K A -2.2703
8 A A 0.0000
9 L A 0.0000
10 N A -1.7791
11 S A -2.1667
12 I A 0.0000
13 I A 0.0000
14 D A -2.7951
15 V A 0.0000
16 Y A 0.0000
17 H A -0.9779
18 K A -1.5134
19 Y A 0.0000
20 S A 0.0000
21 L A 1.1499
22 I A 1.1154
23 K A -0.3924
24 G A -0.8103
25 N A -0.8124
26 F A 0.7619
27 H A -0.2888
28 A A -0.6438
29 V A 0.0000
30 Y A -1.7969
31 R A -3.3858
32 D A -3.0240
33 D A 0.0000
34 L A 0.0000
35 K A -3.8376
36 K A -3.3320
37 L A 0.0000
38 L A 0.0000
39 E A -3.0660
40 T A -1.8150
41 E A 0.0000
42 C A 0.0000
43 P A -1.0305
44 Q A -2.0906
45 Y A -1.0419
46 I A 0.0000
47 R A -2.7831
48 K A -2.5973
49 K A -2.0375
50 G A -1.9585
51 A A -3.0114
52 D A -2.8615
53 V A -1.3282
54 W A 0.0000
55 F A 0.0000
56 K A -2.3031
57 E A -1.2858
58 L A 0.0000
59 D A 0.0000
60 I A 0.4386
61 N A -1.1666
62 T A -1.3533
63 D A -2.0067
64 G A -1.5930
65 A A 0.0000
66 V A 0.0000
67 N A -1.0310
68 F A 0.0000
69 Q A -1.2009
70 E A 0.0000
71 F A 0.0000
72 L A 0.0000
73 I A -0.0007
74 L A 0.0000
75 V A 0.0000
76 I A 0.2268
77 K A -0.6965
78 M A 0.0000
79 G A 0.0000
80 V A -0.7486
81 A A -0.9708
82 A A -1.1226
83 H A 0.0000
84 K A -2.7525
85 K A -3.2201
86 S A -2.5911
87 H A -2.9678
88 E A -3.9446
89 E A -3.4666
1 A B 0.3200
2 L B 0.3539
3 T B -0.7614
4 E B -2.3760
5 L B 0.0000
6 E B -1.4076
7 K B -2.3208
8 A B 0.0000
9 L B 0.0000
10 N B -1.7528
11 S B -2.0146
12 I B 0.0000
13 I B 0.0000
14 D B -2.7314
15 V B 0.0000
16 Y B 0.0000
17 H B -1.0091
18 K B -1.5311
19 Y B 0.0000
20 S B 0.0000
21 L B 1.2282
22 I B 1.2431
23 K B -0.1049
24 G B -0.6884
25 N B -0.7963
26 F B 0.7274
27 H B -0.2054
28 A B -0.6188
29 V B 0.0000
30 Y B -1.9637
31 R B -3.6957
32 D B -3.6173
33 D B 0.0000
34 L B 0.0000
35 K B -3.9526
36 K B -3.4406
37 L B 0.0000
38 L B 0.0000
39 E B -3.2894
40 T B -1.8066
41 E B 0.0000
42 C B 0.0000
43 P B -1.0841
44 Q B -2.2339
45 Y B -1.2400
46 I B 0.0000
47 R B -3.1150
48 K B -3.0735
49 K B -2.5162
50 G B -2.0894
51 A B -3.1205
52 D B -2.8886
53 V B -1.2051
54 W B 0.0000
55 F B 0.0000
56 K B -2.1669
57 E B -0.8866
58 L B 0.0000
59 D B 0.0000
60 I B 0.5024
61 N B -1.0999
62 T B -1.3627
63 D B -2.0637
64 G B -1.7041
65 A B 0.0000
66 V B 0.0000
67 N B -1.0645
68 F B 0.0000
69 Q B -1.2277
70 E B 0.0000
71 F B 0.0000
72 L B 0.0000
73 I B 0.0750
74 L B 0.0000
75 V B 0.0000
76 I B 0.3350
77 K B -0.4920
78 M B 0.0000
79 G B 0.0000
80 V B -0.7141
81 A B -0.8581
82 A B -1.2168
83 H B 0.0000
84 K B -2.8859
85 K B -3.0757
86 S B -2.6292
87 H B -2.8747
88 E B -3.7543
89 E B -3.7950
90 S B -2.8367
91 H B -2.9724
92 K B -3.3473
93 E B -3.1763
1 A C 0.3976
2 L C 0.5511
3 T C -0.6889
4 E C -2.4172
5 L C 0.0000
6 E C -1.3523
7 K C -2.2470
8 A C 0.0000
9 L C 0.0000
10 N C -1.7217
11 S C -1.9612
12 I C 0.0000
13 I C 0.0000
14 D C -2.6229
15 V C 0.0000
16 Y C 0.0000
17 H C -1.3045
18 K C -1.8023
19 Y C 0.0000
20 S C 0.0000
21 L C 0.3158
22 I C 0.9202
23 K C -0.4213
24 G C -1.7235
25 N C -1.8639
26 F C 0.0000
27 H C -0.6165
28 A C 0.0000
29 V C 0.0000
30 Y C 0.0000
31 R C -3.5494
32 D C -3.8768
33 D C 0.0000
34 L C 0.0000
35 K C -3.9862
36 K C -3.3741
37 L C 0.0000
38 L C 0.0000
39 E C -3.2983
40 T C -1.8062
41 E C 0.0000
42 C C 0.0000
43 P C -1.0631
44 Q C -2.1610
45 Y C -1.0814
46 I C 0.0000
47 R C -3.0074
48 K C -2.9832
49 K C -2.4337
50 G C -2.1958
51 A C -3.1048
52 D C -2.7956
53 V C -1.2689
54 W C 0.0000
55 F C 0.0000
56 K C -2.5404
57 E C -2.1559
58 L C 0.0000
59 D C -1.3671
60 I C 0.1782
61 N C -0.9958
62 T C -1.5008
63 D C -2.0767
64 G C -1.9096
65 A C 0.0000
66 V C 0.0000
67 N C -1.0614
68 F C 0.0000
69 Q C -0.6259
70 E C 0.0000
71 F C 0.0000
72 L C 0.0000
73 I C 0.2686
74 L C 0.0000
75 V C 0.0000
76 I C -0.0523
77 K C -0.9413
78 M C 0.0000
79 G C 0.0000
80 V C -0.9604
81 A C -1.1457
82 A C -1.5084
83 H C -2.3007
84 K C -3.2118
85 K C -3.5433
86 S C -2.9463
87 H C -3.6975
88 E C -4.9913
89 E C -4.5108
90 S C -2.8957
91 H C -3.4497
92 K C -3.8229
93 E C -3.6914
1 A D 0.4557
2 L D 0.6554
3 T D -0.3956
4 E D -1.7569
5 L D 0.0000
6 E D -1.0908
7 K D -1.8431
8 A D 0.0000
9 L D 0.0000
10 N D -1.6567
11 S D -2.0804
12 I D 0.0000
13 I D 0.0000
14 D D -2.7235
15 V D 0.0000
16 Y D 0.0000
17 H D -1.4043
18 K D -1.9170
19 Y D 0.0000
20 S D 0.0000
21 L D -0.1245
22 I D 0.1230
23 K D -1.2832
24 G D -2.1990
25 N D -2.2008
26 F D 0.0000
27 H D -0.6620
28 A D 0.0000
29 V D 0.0000
30 Y D -1.9184
31 R D -3.0897
32 D D -2.5748
33 D D 0.0000
34 L D 0.0000
35 K D -3.3419
36 K D -2.7401
37 L D 0.0000
38 L D 0.0000
39 E D -3.0830
40 T D -1.7300
41 E D 0.0000
42 C D 0.0000
43 P D -0.9420
44 Q D -1.9703
45 Y D -0.7662
46 I D 0.0000
47 R D -2.8055
48 K D -2.8672
49 K D -2.2657
50 G D -1.9362
51 A D -2.7278
52 D D -2.3182
53 V D -1.1493
54 W D 0.0000
55 F D 0.0000
56 K D -2.4907
57 E D -1.9892
58 L D 0.0000
59 D D 0.0000
60 I D 0.2471
61 N D -0.9972
62 T D -1.5230
63 D D -2.3145
64 G D -2.0884
65 A D -1.6908
66 V D 0.0000
67 N D -1.1975
68 F D 0.0000
69 Q D -0.6078
70 E D 0.0000
71 F D 0.0000
72 L D 0.0000
73 I D 0.4701
74 L D 0.0000
75 V D 0.0000
76 I D -0.0023
77 K D -0.9195
78 M D 0.0000
79 G D 0.0000
80 V D -0.9657
81 A D -1.1061
82 A D -1.3380
83 H D -2.3308
84 K D -3.0863
85 K D -3.4848
86 S D -2.9057
87 H D -3.4657
88 E D -4.7789
89 E D -4.6171
90 S D -3.1065
91 H D -3.2316
92 K D -4.1135
93 E D -4.0312
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Laboratory of Theory of Biopolymers 2018