| Chain sequence(s) |
A: QSALTQPASVSGSPGQSITISCTGTSSDVGSYDLVSWYQQTPGKAPKLVIYEGNSRPSGVSNRFSGSKSGNTASLTISDLQAEDEADYYCCSYAGSSTLVLFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECEVQLLESGGGLLQPGESLRLSCAASGFTFSNYAMSWVRQAPGKGLEWVSVISGSGGSTYYADSVKGRYTISRDNSKNTLYLQMNGLRAEDTAVFYCATRGDGDYHESFRGRNLYFHYYGLDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:32)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:32)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:32)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:32)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:33)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:36)
[INFO] Main: Simulation completed successfully. (00:02:00)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.6534 | |
| 2 | S | A | -1.0328 | |
| 3 | A | A | -0.5764 | |
| 4 | L | A | 0.0000 | |
| 5 | T | A | -0.3358 | |
| 6 | Q | A | -0.4386 | |
| 8 | P | A | -0.3196 | |
| 9 | A | A | -0.3593 | |
| 10 | S | A | -0.3797 | |
| 11 | V | A | 0.0089 | |
| 12 | S | A | 0.1294 | |
| 13 | G | A | 0.0000 | |
| 14 | S | A | -0.5705 | |
| 15 | P | A | -1.0600 | |
| 16 | G | A | -1.5880 | |
| 17 | Q | A | -1.7418 | |
| 18 | S | A | -0.9959 | |
| 19 | I | A | -0.0864 | |
| 20 | T | A | 0.0980 | |
| 21 | I | A | 0.0000 | |
| 22 | S | A | -0.2502 | |
| 23 | C | A | 0.0000 | |
| 24 | T | A | -0.5041 | |
| 25 | G | A | -0.6696 | |
| 26 | T | A | -0.8116 | |
| 27 | S | A | -0.8787 | |
| 28 | S | A | -0.8225 | |
| 29 | D | A | -1.2715 | |
| 30 | V | A | 0.0000 | |
| 30A | G | A | -1.3011 | |
| 30B | S | A | -0.8810 | |
| 30C | Y | A | -0.4791 | |
| 30D | D | A | -1.8004 | |
| 30E | L | A | 0.0000 | |
| 33 | V | A | 0.0000 | |
| 34 | S | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | -0.8594 | |
| 38 | Q | A | 0.0000 | |
| 39 | T | A | -1.1583 | |
| 40 | P | A | -0.8698 | |
| 41 | G | A | -1.2051 | |
| 42 | K | A | -1.6872 | |
| 43 | A | A | 0.0000 | |
| 44 | P | A | 0.0000 | |
| 45 | K | A | -1.3089 | |
| 46 | L | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | -0.5375 | |
| 50 | E | A | -0.9705 | |
| 51 | G | A | -1.4141 | |
| 52 | N | A | -1.7452 | |
| 53 | S | A | -1.1568 | |
| 54 | R | A | -1.3711 | |
| 55 | P | A | -0.7959 | |
| 56 | S | A | -0.6005 | |
| 57 | G | A | -0.7484 | |
| 58 | V | A | -0.7849 | |
| 59 | S | A | -1.0056 | |
| 60 | N | A | -1.6388 | |
| 61 | R | A | -1.2245 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.9816 | |
| 64 | G | A | -1.0701 | |
| 65 | S | A | -1.1100 | |
| 65A | K | A | -1.4416 | |
| 67 | S | A | -1.1073 | |
| 68 | G | A | -1.2289 | |
| 69 | N | A | -1.3119 | |
| 70 | T | A | -0.9468 | |
| 71 | A | A | 0.0000 | |
| 72 | S | A | -0.5181 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.2240 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.2708 | |
| 77 | D | A | -1.8797 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -1.6473 | |
| 80 | A | A | -1.3470 | |
| 81 | E | A | -2.0406 | |
| 82 | D | A | 0.0000 | |
| 83 | E | A | -1.1791 | |
| 84 | A | A | 0.0000 | |
| 85 | D | A | -0.7268 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | C | A | 0.0000 | |
| 90 | S | A | 0.0000 | |
| 91 | Y | A | 0.0000 | |
| 92 | A | A | 0.9836 | |
| 93 | G | A | 0.0000 | |
| 93A | S | A | 0.0000 | |
| 93B | S | A | -0.0926 | |
| 93C | T | A | -0.1341 | |
| 93D | L | A | 0.0000 | |
| 94 | V | A | 0.0000 | |
| 95 | L | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | G | A | -0.8723 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.7452 | |
| 104 | L | A | 0.0000 | |
| 105 | T | A | -0.2999 | |
| 106 | V | A | -0.2234 | |
| 107 | L | A | 0.0531 | |
| 108 | G | A | -0.9400 | |
| 113 | Q | A | -1.7559 | |
| 114 | P | A | -1.6319 | |
| 115 | K | A | -2.0160 | |
| 116 | A | A | -1.2189 | |
| 117 | A | A | -0.6574 | |
| 118 | P | A | -0.2828 | |
| 119 | S | A | -0.1719 | |
| 120 | V | A | 0.0000 | |
| 121 | T | A | -0.4274 | |
| 122 | L | A | 0.0000 | |
| 123 | F | A | 0.0000 | |
| 124 | P | A | -0.2502 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | 0.0000 | |
| 127 | S | A | -1.0912 | |
| 128 | E | A | -1.6234 | |
| 129 | E | A | 0.0000 | |
| 130 | L | A | -1.5535 | |
| 131 | Q | A | -2.0069 | |
| 132 | A | A | -1.5527 | |
| 133 | N | A | -2.3438 | |
| 134 | K | A | -1.9324 | |
| 135 | A | A | 0.0000 | |
| 136 | T | A | 0.0000 | |
| 137 | L | A | 0.0000 | |
| 138 | V | A | 0.0000 | |
| 139 | C | A | 0.0000 | |
| 140 | L | A | 0.0000 | |
| 141 | I | A | 0.0000 | |
| 142 | S | A | 0.0000 | |
| 143 | D | A | -0.9726 | |
| 144 | F | A | 0.0000 | |
| 145 | Y | A | 0.0000 | |
| 146 | P | A | -0.8092 | |
| 147 | G | A | -0.5319 | |
| 148 | A | A | -0.2488 | |
| 149 | V | A | -0.2048 | |
| 150 | T | A | -0.1559 | |
| 151 | V | A | 0.1285 | |
| 152 | A | A | -0.3806 | |
| 153 | W | A | 0.0000 | |
| 154 | K | A | -0.9086 | |
| 155 | A | A | 0.0000 | |
| 156 | D | A | -1.9805 | |
| 157 | S | A | -1.2040 | |
| 158 | S | A | -0.7778 | |
| 159 | P | A | -0.8372 | |
| 160 | V | A | -0.7188 | |
| 161 | K | A | -1.5394 | |
| 162 | A | A | -0.7208 | |
| 163 | G | A | -0.6513 | |
| 164 | V | A | -0.2753 | |
| 165 | E | A | -0.6340 | |
| 166 | T | A | 0.0000 | |
| 167 | T | A | -0.4042 | |
| 168 | T | A | -0.3736 | |
| 169 | P | A | -0.6824 | |
| 170 | S | A | -1.0550 | |
| 171 | K | A | -1.5718 | |
| 172 | Q | A | -1.8952 | |
| 173 | S | A | -1.7005 | |
| 174 | N | A | -2.2217 | |
| 175 | N | A | 0.0000 | |
| 176 | K | A | -1.6340 | |
| 177 | Y | A | 0.0000 | |
| 178 | A | A | 0.0000 | |
| 179 | A | A | 0.0000 | |
| 180 | S | A | 0.0000 | |
| 181 | S | A | 0.0000 | |
| 182 | Y | A | 0.0391 | |
| 183 | L | A | 0.0000 | |
| 184 | S | A | -0.1396 | |
| 185 | L | A | -0.4790 | |
| 186 | T | A | -1.5382 | |
| 187 | P | A | -2.1147 | |
| 188 | E | A | -2.8767 | |
| 189 | Q | A | -2.2191 | |
| 190 | W | A | -1.9229 | |
| 191 | K | A | -2.9294 | |
| 192 | S | A | -2.2979 | |
| 193 | H | A | -2.3034 | |
| 194 | R | A | -2.7778 | |
| 195 | S | A | -1.8389 | |
| 196 | Y | A | 0.0000 | |
| 197 | S | A | 0.0000 | |
| 198 | C | A | 0.0000 | |
| 199 | Q | A | -0.7357 | |
| 200 | V | A | 0.0000 | |
| 201 | T | A | -0.5466 | |
| 202 | H | A | 0.0000 | |
| 203 | E | A | -2.0588 | |
| 204 | G | A | -1.4201 | |
| 205 | S | A | -0.8368 | |
| 206 | T | A | -0.4770 | |
| 207 | V | A | -0.0887 | |
| 208 | E | A | -1.2627 | |
| 209 | K | A | -1.1825 | |
| 210 | T | A | -0.7939 | |
| 211 | V | A | -0.7022 | |
| 212 | A | A | -1.3652 | |
| 213 | P | A | 0.0000 | |
| 214 | T | A | -1.7758 | |
| 215 | E | A | -2.3499 | |
| 216 | C | A | -1.2889 | |
| 1 | E | A | -1.4320 | |
| 2 | V | A | 0.1918 | |
| 3 | Q | A | -0.2841 | |
| 4 | L | A | 0.0000 | |
| 5 | L | A | 0.9692 | |
| 6 | E | A | 0.0808 | |
| 7 | S | A | -0.4351 | |
| 8 | G | A | -0.6701 | |
| 9 | G | A | -0.4286 | |
| 10 | G | A | 0.0807 | |
| 11 | L | A | 0.5467 | |
| 12 | L | A | -0.3042 | |
| 13 | Q | A | -1.4580 | |
| 14 | P | A | -1.6676 | |
| 15 | G | A | -1.7066 | |
| 16 | E | A | -1.9141 | |
| 17 | S | A | -1.4491 | |
| 18 | L | A | -0.9398 | |
| 19 | R | A | -1.2277 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.2554 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1177 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.4484 | |
| 26 | G | A | -0.5108 | |
| 27 | F | A | -0.1431 | |
| 28 | T | A | -0.3167 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.5517 | |
| 30A | N | A | -0.3107 | |
| 31 | Y | A | 0.0898 | |
| 32 | A | A | 0.0000 | |
| 33 | M | A | 0.0000 | |
| 34 | S | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.7869 | |
| 39 | A | A | -1.1574 | |
| 40 | P | A | -0.9382 | |
| 41 | G | A | -1.4752 | |
| 42 | K | A | -2.2396 | |
| 43 | G | A | -1.4479 | |
| 44 | L | A | 0.0000 | |
| 45 | E | A | -0.9291 | |
| 46 | W | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | S | A | 0.0000 | |
| 49 | V | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 51A | G | A | 0.0000 | |
| 52 | S | A | -0.7271 | |
| 53 | G | A | -0.9242 | |
| 54 | G | A | -1.1384 | |
| 55 | S | A | -0.9390 | |
| 56 | T | A | -0.3822 | |
| 57 | Y | A | 0.0000 | |
| 58 | Y | A | -0.9043 | |
| 59 | A | A | 0.0000 | |
| 60 | D | A | -2.6612 | |
| 61 | S | A | -1.7509 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.4375 | |
| 64 | G | A | -1.6733 | |
| 65 | R | A | -1.5453 | |
| 66 | Y | A | 0.0000 | |
| 67 | T | A | -0.6916 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.3106 | |
| 70 | R | A | -1.0735 | |
| 71 | D | A | -1.6406 | |
| 72 | N | A | -2.2117 | |
| 73 | S | A | -1.7898 | |
| 74 | K | A | -2.4784 | |
| 75 | N | A | -1.8354 | |
| 76 | T | A | -1.1080 | |
| 77 | L | A | 0.0000 | |
| 78 | Y | A | -0.2753 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -0.8300 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.6754 | |
| 83 | G | A | -1.5022 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -1.9694 | |
| 86 | A | A | -1.3839 | |
| 87 | E | A | -2.0531 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.5979 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.1218 | |
| 92 | F | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | T | A | 0.0000 | |
| 97 | R | A | 0.0000 | |
| 98 | G | A | 0.0000 | |
| 102A | D | A | 0.0000 | |
| 102B | G | A | 0.0000 | |
| 102C | D | A | 0.1378 | |
| 102D | Y | A | 0.9455 | |
| 102E | H | A | 0.0687 | |
| 102F | E | A | 0.0000 | |
| 102G | S | A | 0.5168 | |
| 102H | F | A | 1.4167 | |
| 102I | R | A | 0.0000 | |
| 102J | G | A | -0.5217 | |
| 102K | R | A | -1.3230 | |
| 102L | N | A | -1.2196 | |
| 102M | L | A | 0.7730 | |
| 102N | Y | A | 1.9290 | |
| 102O | F | A | 1.8205 | |
| 102P | H | A | 0.0000 | |
| 102Q | Y | A | 0.6271 | |
| 102R | Y | A | 0.0000 | |
| 102S | G | A | 0.0000 | |
| 102T | L | A | 0.0000 | |
| 103 | D | A | -0.6694 | |
| 104 | V | A | -0.0606 | |
| 105 | W | A | 0.0000 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -1.2728 | |
| 108 | G | A | -0.6668 | |
| 109 | T | A | -0.2958 | |
| 110 | T | A | -0.1964 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.0288 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.5197 | |
| 115 | S | A | -0.5866 | |
| 134 | A | A | -0.3540 | |
| 135 | S | A | -0.4006 | |
| 136 | T | A | -0.5017 | |
| 137 | K | A | -0.9664 | |
| 138 | G | A | -1.2350 | |
| 139 | P | A | 0.0000 | |
| 140 | S | A | -0.2421 | |
| 141 | V | A | -0.2343 | |
| 142 | F | A | 0.0000 | |
| 143 | P | A | -0.5894 | |
| 144 | L | A | 0.0000 | |
| 145 | A | A | 0.0000 | |
| 146 | P | A | 0.0000 | |
| 147 | S | A | 0.0000 | |
| 148 | S | A | -0.7762 | |
| 149 | K | A | -0.7606 | |
| 150 | S | A | -0.7872 | |
| 151 | T | A | -0.8274 | |
| 152 | S | A | -0.7518 | |
| 153 | G | A | -0.8630 | |
| 154 | G | A | -0.8515 | |
| 155 | T | A | -0.6249 | |
| 156 | A | A | 0.0000 | |
| 157 | A | A | 0.0000 | |
| 158 | L | A | 0.0000 | |
| 159 | G | A | 0.0000 | |
| 160 | C | A | 0.0000 | |
| 161 | L | A | 0.0000 | |
| 162 | V | A | 0.0000 | |
| 163 | K | A | 0.0000 | |
| 164 | D | A | -0.2334 | |
| 165 | Y | A | 0.0000 | |
| 166 | F | A | 0.0000 | |
| 167 | P | A | 0.0000 | |
| 168 | E | A | -0.5525 | |
| 169 | P | A | -0.9082 | |
| 170 | V | A | 0.0000 | |
| 171 | T | A | -0.6570 | |
| 172 | V | A | -0.3502 | |
| 173 | S | A | -0.3272 | |
| 174 | W | A | 0.0000 | |
| 175 | N | A | -0.7385 | |
| 176 | S | A | -0.6779 | |
| 177 | G | A | -0.4198 | |
| 178 | A | A | -0.1888 | |
| 179 | L | A | -0.0350 | |
| 180 | T | A | -0.1812 | |
| 181 | S | A | -0.1905 | |
| 182 | G | A | -0.2619 | |
| 183 | V | A | 0.1809 | |
| 184 | H | A | 0.0000 | |
| 185 | T | A | 0.0296 | |
| 186 | F | A | 0.0000 | |
| 187 | P | A | -0.3006 | |
| 188 | A | A | 0.1607 | |
| 189 | V | A | 0.7871 | |
| 190 | L | A | 1.4374 | |
| 191 | Q | A | 0.5018 | |
| 192 | S | A | -0.0152 | |
| 193 | S | A | -0.1686 | |
| 194 | G | A | -0.0221 | |
| 195 | L | A | 0.2126 | |
| 196 | Y | A | 0.0000 | |
| 197 | S | A | 0.0000 | |
| 198 | L | A | 0.0000 | |
| 199 | S | A | 0.0000 | |
| 200 | S | A | 0.0000 | |
| 201 | V | A | 0.0000 | |
| 202 | V | A | 0.0000 | |
| 203 | T | A | -0.2020 | |
| 204 | V | A | 0.0000 | |
| 205 | P | A | -0.6079 | |
| 206 | S | A | 0.0000 | |
| 207 | S | A | -0.8829 | |
| 208 | S | A | -0.7555 | |
| 209 | L | A | 0.0000 | |
| 210 | G | A | -0.9893 | |
| 211 | T | A | -0.8601 | |
| 212 | Q | A | -1.2379 | |
| 213 | T | A | -1.0285 | |
| 214 | Y | A | 0.0000 | |
| 215 | I | A | -0.8290 | |
| 216 | C | A | 0.0000 | |
| 217 | N | A | 0.0000 | |
| 218 | V | A | 0.0000 | |
| 219 | N | A | -1.8863 | |
| 220 | H | A | 0.0000 | |
| 221 | K | A | -2.7577 | |
| 222 | P | A | -1.6163 | |
| 223 | S | A | -1.7932 | |
| 224 | N | A | -2.4643 | |
| 225 | T | A | -1.9214 | |
| 226 | K | A | -2.3923 | |
| 227 | V | A | -1.2359 | |
| 228 | D | A | -2.3498 | |
| 229 | K | A | -1.9304 | |
| 230 | R | A | -2.2230 | |
| 231 | V | A | 0.0000 | |
| 232 | E | A | -1.3084 | |
| 233 | P | A | -0.8047 | |
| 234 | K | A | -0.9551 | |
| 235 | S | A | -1.2488 | |
| 236 | C | A | -1.5965 | |
| 237 | D | A | -2.7598 | |
| 238 | K | A | -2.7787 | |
| 239 | T | A | -1.4562 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine