Project name: HFQ

Status: done

Started: 2024-04-25 07:30:38
Settings
Chain sequence(s) A: MSAKNNIQDQLLNTARKDKLDLTIYLLNGVPLKGKVVSFDNFTIVLEQENKQSLVYKHAISTIIPAKIIKLYTEEAKDNKDAAQG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:58)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-4.985
Maximal score value
1.5832
Average score
-1.0577
Total score value
-89.9035

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7009
2 S A -0.4310
3 A A -1.3019
4 K A -2.6159
5 N A -2.4978
6 N A -1.5604
7 I A 0.1539
8 Q A -0.7228
9 D A -1.7492
10 Q A -0.6706
11 L A 0.1666
12 L A 0.0000
13 N A -1.5097
14 T A -2.0156
15 A A 0.0000
16 R A -2.8488
17 K A -3.4761
18 D A -4.0712
19 K A -3.7381
20 L A 0.0000
21 D A -3.0051
22 L A 0.0000
23 T A -0.3319
24 I A 0.0000
25 Y A 1.0973
26 L A 1.1319
27 L A 1.0599
28 N A -0.2218
29 G A 0.2517
30 V A 1.1922
31 P A 0.3889
32 L A -0.1980
33 K A -2.2734
34 G A 0.0000
35 K A -2.8184
36 V A 0.0000
37 V A -0.3832
38 S A -0.0991
39 F A -0.1999
40 D A -1.6230
41 N A -1.1809
42 F A 0.9074
43 T A 0.8688
44 I A 0.0000
45 V A 0.4802
46 L A 0.0000
47 E A -3.3563
48 Q A -4.0281
49 E A -3.9334
50 N A -3.7327
51 K A -4.0826
52 Q A -2.8038
53 S A -0.3847
54 L A 1.5832
55 V A 0.0000
56 Y A 1.5693
57 K A 0.4878
58 H A -0.0511
59 A A 0.5097
60 I A 0.7321
61 S A 0.4049
62 T A 0.7434
63 I A 0.8504
64 I A 1.1102
65 P A 0.0041
66 A A -0.4669
67 K A -1.0768
68 I A 1.1120
69 I A 0.1385
70 K A -0.7848
71 L A 0.5230
72 Y A 0.0986
73 T A -1.5738
74 E A -3.6827
75 E A -3.7368
76 A A -3.1388
77 K A -4.6580
78 D A -4.9850
79 N A -4.2661
80 K A -4.3135
81 D A -4.0240
82 A A -2.3928
83 A A -1.8289
84 Q A -2.0793
85 G A -1.2457
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Laboratory of Theory of Biopolymers 2018