Project name: 6ce27fbfd03ac78

Status: done

Started: 2020-11-18 01:07:46
Settings
Chain sequence(s) X: TDWNEIKGKVPVEVVQSPHSPNLYFVLLVPKVALEYHNLNNQVVKESLEVKATQSSFNPTQRLQKDSPVKDSSKQGEKLSETTASSMSSGMATSTRAKALKVEVERGSQSDSLLKNDFAKKPLKHKNSSGEVKLEAEKEFTEAWKPLLTTDQIAREKGMGATVVSFYDAPYSENHTAFGLVDHIDPKKMVENYPPSWKT
input PDB
Selected Chain(s) X
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with X chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:56)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:04:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:59)
Show buried residues

Minimal score value
-3.3841
Maximal score value
2.1187
Average score
-0.9618
Total score value
-191.402

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T X -0.1647
2 D X -1.5389
3 W X -0.7851
4 N X -2.1625
5 E X -2.4944
6 I X 0.0000
7 K X -2.4043
8 G X -1.8771
9 K X 0.0000
10 V X 0.1125
11 P X 0.4817
12 V X 1.1943
13 E X 0.4726
14 V X 2.1122
15 V X 1.9134
16 Q X 0.0632
17 S X -0.6219
18 P X -0.9353
19 H X -1.4359
20 S X -1.0428
21 P X -0.9757
22 N X -1.0602
23 L X 0.0486
24 Y X 1.0824
25 F X 1.8927
26 V X 0.0000
27 L X 1.1365
28 L X 0.0000
29 V X 0.5409
30 P X -0.3264
31 K X -0.7317
32 V X 0.6253
33 A X 0.4636
34 L X 0.5938
35 E X -0.6234
36 Y X -0.0364
37 H X -1.4826
38 N X -1.7351
39 L X -1.2170
40 N X -2.2485
41 N X -2.8985
42 Q X -2.3364
43 V X -0.9337
44 V X -1.5875
45 K X -2.7003
46 E X -2.3661
47 S X -0.9095
48 L X 0.0884
49 E X -1.1428
50 V X 0.6847
51 K X -0.5775
52 A X -0.2105
53 T X -0.6540
54 Q X -1.3372
55 S X -0.9423
56 S X -0.5658
57 F X -0.2286
58 N X -1.5118
59 P X -1.2231
60 T X -1.0509
61 Q X -1.7699
62 R X -1.1345
63 L X 0.0484
64 Q X -1.0380
65 K X -2.3051
66 D X -2.2372
67 S X -1.6460
68 P X -1.9081
69 V X -1.2657
70 K X -2.4000
71 D X -2.2323
72 S X -1.4929
73 S X -1.2733
74 K X -2.7786
75 Q X -2.9626
76 G X -2.3299
77 E X -2.7341
78 K X -2.9156
79 L X -1.1455
80 S X -1.2060
81 E X -1.6125
82 T X -0.7455
83 T X -0.5499
84 A X -0.3627
85 S X -0.2196
86 S X 0.0766
87 M X 0.8583
88 S X 0.1630
89 S X 0.1310
90 G X 0.3836
91 M X 1.0747
92 A X 0.5186
93 T X -0.1088
94 S X -0.9284
95 T X -1.1657
96 R X -2.0564
97 A X -1.3069
98 K X -1.3063
99 A X -0.3167
100 L X 0.1889
101 K X -0.2097
102 V X 0.3666
103 E X -0.5746
104 V X -0.4182
105 E X -1.7168
106 R X -2.0263
107 G X -1.1016
108 S X -1.3019
109 Q X -1.8772
110 S X -1.8285
111 D X -2.1683
112 S X -1.3709
113 L X -0.4664
114 L X 0.1028
115 K X -0.9954
116 N X -0.5773
117 D X -0.6259
118 F X 1.0200
119 A X -0.2989
120 K X -2.3231
121 K X -3.0897
122 P X -2.9031
123 L X -2.3312
124 K X -2.7791
125 H X -2.7569
126 K X -3.0735
127 N X -2.9600
128 S X -1.6918
129 S X -1.1511
130 G X -1.9686
131 E X -3.1241
132 V X -2.5962
133 K X -2.0194
134 L X -0.0728
135 E X -1.4653
136 A X -1.3155
137 E X -2.6661
138 K X -2.4893
139 E X 0.0000
140 F X -0.8296
141 T X -1.2500
142 E X -2.3375
143 A X -1.4283
144 W X -1.0493
145 K X -1.8219
146 P X -0.5037
147 L X 0.5264
148 L X 0.1291
149 T X -0.7250
150 T X -1.2232
151 D X -2.3078
152 Q X -2.0184
153 I X -1.6353
154 A X -2.3761
155 R X -3.3841
156 E X -3.2729
157 K X -2.1441
158 G X -2.0737
159 M X -0.8150
160 G X -0.5286
161 A X 0.1841
162 T X 0.0000
163 V X 0.5523
164 V X 0.0000
165 S X 1.6049
166 F X 1.4619
167 Y X 0.5202
168 D X -0.6187
169 A X -0.9481
170 P X -0.7430
171 Y X 0.2610
172 S X -1.2632
173 E X -2.5532
174 N X -2.6271
175 H X -2.1757
176 T X -0.9224
177 A X 0.5717
178 F X 2.1187
179 G X 1.4709
180 L X 1.6139
181 V X 0.5459
182 D X -1.1179
183 H X -0.5899
184 I X -0.0278
185 D X -1.4073
186 P X -1.4338
187 K X -2.3810
188 K X -2.4531
189 M X -1.1335
190 V X -1.4263
191 E X -2.7155
192 N X -2.1774
193 Y X -0.8498
194 P X -0.5828
195 P X -0.7812
196 S X -0.2622
197 W X 0.2617
198 K X -1.1889
199 T X -0.6939
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Laboratory of Theory of Biopolymers 2018