| Chain sequence(s) |
C: TLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEK
input PDB |
| Selected Chain(s) | C |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | AK22C,AR8C,DR17C,EK41C,EK32C |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.0127599 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] FoldX: Building mutant model (00:02:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:05:30)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:33)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:06:33)
[INFO] Main: Simulation completed successfully. (00:06:33)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | T | C | 0.2127 | |
| 2 | L | C | 1.4967 | |
| 3 | S | C | 0.3428 | |
| 4 | L | C | 1.7872 | |
| 5 | L | C | 1.8203 | |
| 6 | T | C | -0.0546 | |
| 7 | K | C | -2.0384 | |
| 8 | R | C | -2.4576 | mutated: AR8C |
| 9 | K | C | -1.8969 | |
| 10 | L | C | 0.1121 | |
| 11 | H | C | -0.5266 | |
| 12 | I | C | 0.7030 | |
| 13 | K | C | -1.7258 | |
| 14 | K | C | -1.8228 | |
| 15 | L | C | 0.5203 | |
| 16 | E | C | -1.6005 | |
| 17 | R | C | -2.0057 | mutated: DR17C |
| 18 | C | C | -0.2867 | |
| 19 | D | C | -2.1070 | |
| 20 | R | C | -2.0537 | |
| 21 | K | C | -2.2664 | |
| 22 | K | C | -1.6902 | mutated: AK22C |
| 23 | V | C | 1.2899 | |
| 24 | H | C | -0.8188 | |
| 25 | Q | C | -0.8033 | |
| 26 | I | C | 0.8502 | |
| 27 | D | C | -1.0249 | |
| 28 | Q | C | -1.2487 | |
| 29 | L | C | 0.2352 | |
| 30 | Q | C | -0.9789 | |
| 31 | R | C | -2.2349 | |
| 32 | K | C | -1.8170 | mutated: EK32C |
| 33 | Q | C | -1.1598 | |
| 34 | R | C | -1.5038 | |
| 35 | H | C | -1.0492 | |
| 36 | L | C | 0.3120 | |
| 37 | K | C | -1.6928 | |
| 38 | R | C | -2.3390 | |
| 39 | Q | C | -1.1710 | |
| 40 | L | C | 1.0275 | |
| 41 | K | C | -1.7268 | mutated: EK41C |
| 42 | K | C | -2.0055 |