Chain sequence(s) |
C: TLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEK
input PDB |
Selected Chain(s) | C |
Distance of aggregation | 5 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | AK22C,AR8C,DR17C,EK41C,EK32C |
Energy difference between WT (input) and mutated protein (by FoldX) | 0.0127599 kcal/mol |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:01) [INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:01) [INFO] runJob: Creating pdb object from: input.pdb (00:00:01) [INFO] FoldX: Starting FoldX energy minimalization (00:00:01) [INFO] FoldX: Building mutant model (00:02:08) [INFO] FoldX: Starting FoldX energy minimalization (00:05:30) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:06:33) [CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie creation failed. (00:06:33) [INFO] Main: Simulation completed successfully. (00:06:33) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | T | C | 0.2127 | |
2 | L | C | 1.4967 | |
3 | S | C | 0.3428 | |
4 | L | C | 1.7872 | |
5 | L | C | 1.8203 | |
6 | T | C | -0.0546 | |
7 | K | C | -2.0384 | |
8 | R | C | -2.4576 | mutated: AR8C |
9 | K | C | -1.8969 | |
10 | L | C | 0.1121 | |
11 | H | C | -0.5266 | |
12 | I | C | 0.7030 | |
13 | K | C | -1.7258 | |
14 | K | C | -1.8228 | |
15 | L | C | 0.5203 | |
16 | E | C | -1.6005 | |
17 | R | C | -2.0057 | mutated: DR17C |
18 | C | C | -0.2867 | |
19 | D | C | -2.1070 | |
20 | R | C | -2.0537 | |
21 | K | C | -2.2664 | |
22 | K | C | -1.6902 | mutated: AK22C |
23 | V | C | 1.2899 | |
24 | H | C | -0.8188 | |
25 | Q | C | -0.8033 | |
26 | I | C | 0.8502 | |
27 | D | C | -1.0249 | |
28 | Q | C | -1.2487 | |
29 | L | C | 0.2352 | |
30 | Q | C | -0.9789 | |
31 | R | C | -2.2349 | |
32 | K | C | -1.8170 | mutated: EK32C |
33 | Q | C | -1.1598 | |
34 | R | C | -1.5038 | |
35 | H | C | -1.0492 | |
36 | L | C | 0.3120 | |
37 | K | C | -1.6928 | |
38 | R | C | -2.3390 | |
39 | Q | C | -1.1710 | |
40 | L | C | 1.0275 | |
41 | K | C | -1.7268 | mutated: EK41C |
42 | K | C | -2.0055 |