Project name: CTMAD [mutate: AR8C, DR17C, AK22C, EK32C, EK41C]

Status: done

Started: 2020-11-17 16:27:34
Settings
Chain sequence(s) C: TLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEK
input PDB
Selected Chain(s) C
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AK22C,AR8C,DR17C,EK41C,EK32C
Energy difference between WT (input) and mutated protein (by FoldX) 0.0127599 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:02:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:05:30)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:06:33)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:06:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:06:33)
Show buried residues

Minimal score value
-2.4576
Maximal score value
1.8203
Average score
-0.7952
Total score value
-33.3974

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T C 0.2127
2 L C 1.4967
3 S C 0.3428
4 L C 1.7872
5 L C 1.8203
6 T C -0.0546
7 K C -2.0384
8 R C -2.4576 mutated: AR8C
9 K C -1.8969
10 L C 0.1121
11 H C -0.5266
12 I C 0.7030
13 K C -1.7258
14 K C -1.8228
15 L C 0.5203
16 E C -1.6005
17 R C -2.0057 mutated: DR17C
18 C C -0.2867
19 D C -2.1070
20 R C -2.0537
21 K C -2.2664
22 K C -1.6902 mutated: AK22C
23 V C 1.2899
24 H C -0.8188
25 Q C -0.8033
26 I C 0.8502
27 D C -1.0249
28 Q C -1.2487
29 L C 0.2352
30 Q C -0.9789
31 R C -2.2349
32 K C -1.8170 mutated: EK32C
33 Q C -1.1598
34 R C -1.5038
35 H C -1.0492
36 L C 0.3120
37 K C -1.6928
38 R C -2.3390
39 Q C -1.1710
40 L C 1.0275
41 K C -1.7268 mutated: EK41C
42 K C -2.0055
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Laboratory of Theory of Biopolymers 2018