Project name: 709a77ebe96f564

Status: done

Started: 2021-10-15 17:05:44
Settings
Chain sequence(s) A: CGGRIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:18)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:01:18)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:18)
Show buried residues

Minimal score value
-3.9433
Maximal score value
1.2724
Average score
-1.5397
Total score value
-66.2055

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
273 C A 0.3515
274 G A -0.5334
275 G A -1.0085
276 R A -1.9771
277 I A -0.9412
278 A A -1.8105
279 R A -3.4000
280 L A -2.0672
281 E A -3.3454
282 E A -3.9433
283 K A -3.0217
284 V A -1.8220
285 K A -3.4407
286 T A -2.2467
287 L A -1.8203
288 K A -2.9990
289 A A -2.3027
290 Q A -2.6427
291 N A -2.6644
292 S A -1.9888
293 E A -2.3883
294 L A -0.2426
295 A A -0.7839
296 S A -0.8854
297 T A -0.0207
298 A A -0.5304
299 N A -1.4771
300 M A 0.0002
301 L A 0.1900
302 R A -2.2443
303 E A -2.6545
304 Q A -1.5254
305 V A -1.0033
306 A A -1.7757
307 Q A -2.4013
308 L A -0.9584
309 K A -2.0750
310 Q A -1.9510
311 K A -1.6540
312 V A 0.4490
313 M A 0.3865
314 N A -0.3082
315 Y A 1.2724
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Laboratory of Theory of Biopolymers 2018