Project name: 1b5u_V

Status: done

Started: 2020-02-12 16:08:47
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGIALANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:25)
[INFO]       Movie:    Creting movie with webm format                                              (00:04:29)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:32)
Show buried residues

Minimal score value
-4.3548
Maximal score value
1.4784
Average score
-1.116
Total score value
-145.0852

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.5170
2 V A -0.3300
3 F A 0.0000
4 E A -2.1175
5 R A -1.7738
6 C A -1.3182
7 E A -1.6728
8 L A 0.0000
9 A A 0.0000
10 R A -1.6269
11 T A -1.4364
12 L A 0.0000
13 K A -2.2621
14 R A -2.4311
15 L A -1.1267
16 G A -1.4875
17 M A 0.0000
18 D A -2.0764
19 G A -1.7837
20 Y A -1.7689
21 R A -2.6364
22 G A -1.6214
23 I A 0.0000
24 A A -0.9657
25 L A 0.0000
26 A A -1.0442
27 N A -1.0923
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.1674
34 W A -0.4861
35 E A -0.4115
36 S A -0.7768
37 G A -0.7181
38 Y A 0.0000
39 N A -1.4712
40 T A 0.0000
41 R A -2.5958
42 A A -1.3843
43 T A -0.9670
44 N A -0.8171
45 Y A -0.2088
46 N A -1.2907
47 A A -1.2273
48 G A -1.6058
49 D A -2.5102
50 R A -2.8507
51 S A 0.0000
52 T A -1.0490
53 D A -0.5766
54 Y A -0.5727
55 G A 0.0000
56 I A 0.0000
57 F A 0.0000
58 Q A 0.0000
59 I A 0.0000
60 N A -0.3175
61 S A 0.0000
62 R A -0.3975
63 Y A 1.4784
64 W A 0.3115
65 C A 0.0000
66 N A -1.6575
67 D A -1.7074
68 G A -1.8506
69 K A -2.6679
70 T A -1.8964
71 P A -1.3031
72 G A -0.2592
73 A A 0.1898
74 V A 1.4305
75 N A 0.0578
76 A A 0.0880
77 C A -0.5455
78 H A -0.9419
79 L A -0.8698
80 S A -0.9516
81 C A 0.0000
82 S A -0.8173
83 A A -1.0901
84 L A 0.0000
85 L A -2.0985
86 Q A -3.2399
87 D A -3.6050
88 N A -2.9169
89 I A 0.0000
90 A A -1.1046
91 D A -1.3616
92 A A 0.0000
93 V A 0.0000
94 A A -0.6362
95 C A 0.0000
96 A A 0.0000
97 K A -1.7884
98 R A -2.0325
99 V A 0.0000
100 V A 0.0000
101 R A -3.2982
102 D A -2.6518
103 P A -1.6643
104 Q A -1.7842
105 G A -2.1898
106 I A -1.6011
107 R A -2.1069
108 A A -0.8512
109 W A 0.0000
110 V A 0.2956
111 A A -0.7506
112 W A 0.0000
113 R A -3.1514
114 N A -2.9362
115 R A -2.9121
116 C A 0.0000
117 Q A -3.7064
118 N A -3.5031
119 R A -4.3548
120 D A -3.7616
121 V A -3.0061
122 R A -3.3732
123 Q A -2.6967
124 Y A -1.7024
125 V A -1.2864
126 Q A -2.0782
127 G A -1.3059
128 C A 0.0000
129 G A -0.4159
130 V A -0.0153
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Laboratory of Theory of Biopolymers 2018