| Chain sequence(s) |
A: DIQMTQSPSSLSASVGDRVTITCRASRDINNNLAWFQQKPGKAPKSLIYAASSLQSGVPSKFSGSGSGTDFTLTISSLQPEDFATYYCQHYRSVPFTFGPGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVQLVESGGGLIQPGGSLRLSCAASGFTVSTNYVSWVRQAPGKGLEWVSVIFKDGTPYYTDSVKGRFTISRDNSKNTVYFEMDSLRVEDTAVYYCARVMSGSYHDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:28)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:28)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:28)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:28)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:29)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:32)
[INFO] Main: Simulation completed successfully. (00:01:55)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.1065 | |
| 2 | I | A | 0.0000 | |
| 3 | Q | A | -1.9828 | |
| 4 | M | A | -1.4238 | |
| 5 | T | A | -0.8686 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.6321 | |
| 8 | P | A | -0.4218 | |
| 9 | S | A | -0.5357 | |
| 10 | S | A | -0.5225 | |
| 11 | L | A | -0.1966 | |
| 12 | S | A | -0.5782 | |
| 13 | A | A | 0.0000 | |
| 14 | S | A | -0.4073 | |
| 15 | V | A | 0.5995 | |
| 16 | G | A | -0.3720 | |
| 17 | D | A | -1.5470 | |
| 18 | R | A | -2.2003 | |
| 19 | V | A | 0.0000 | |
| 20 | T | A | -0.4847 | |
| 21 | I | A | 0.0000 | |
| 22 | T | A | -0.7339 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -2.3515 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -2.1954 | |
| 27 | R | A | -3.1982 | |
| 28 | D | A | -2.5688 | |
| 29 | I | A | 0.0000 | |
| 30 | N | A | -2.0031 | |
| 31 | N | A | -1.4286 | |
| 32 | N | A | -0.9357 | |
| 33 | L | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | F | A | 0.0000 | |
| 37 | Q | A | 0.0000 | |
| 38 | Q | A | 0.0000 | |
| 39 | K | A | -1.5908 | |
| 40 | P | A | -1.3981 | |
| 41 | G | A | -1.6385 | |
| 42 | K | A | -2.6011 | |
| 43 | A | A | -1.6928 | |
| 44 | P | A | 0.0000 | |
| 45 | K | A | -1.8397 | |
| 46 | S | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | 0.2343 | |
| 50 | A | A | -0.1342 | |
| 51 | A | A | 0.0000 | |
| 52 | S | A | -0.2459 | |
| 53 | S | A | 0.1063 | |
| 54 | L | A | 0.3381 | |
| 55 | Q | A | -0.1290 | |
| 56 | S | A | -0.3860 | |
| 57 | G | A | -0.4948 | |
| 58 | V | A | -0.3821 | |
| 59 | P | A | -0.3896 | |
| 60 | S | A | -0.4703 | |
| 61 | K | A | -0.7938 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.2132 | |
| 64 | G | A | -0.1445 | |
| 65 | S | A | -0.6128 | |
| 66 | G | A | -1.2241 | |
| 67 | S | A | -1.3038 | |
| 68 | G | A | -1.8808 | |
| 69 | T | A | -2.2310 | |
| 70 | D | A | -2.4343 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.6825 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.5626 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.2421 | |
| 77 | S | A | -1.1124 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -0.6448 | |
| 80 | P | A | -0.8446 | |
| 81 | E | A | -1.7641 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | -0.4523 | |
| 84 | A | A | 0.0000 | |
| 85 | T | A | -0.3671 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Q | A | 0.0000 | |
| 90 | H | A | 0.0000 | |
| 91 | Y | A | 0.2980 | |
| 92 | R | A | -1.1583 | |
| 93 | S | A | -0.4711 | |
| 94 | V | A | 0.0668 | |
| 95 | P | A | -0.2804 | |
| 96 | F | A | 0.3262 | |
| 97 | T | A | -0.1368 | |
| 98 | F | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | P | A | -0.6718 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.4885 | |
| 104 | V | A | 0.0000 | |
| 105 | D | A | 0.0000 | |
| 106 | L | A | -0.6239 | |
| 107 | K | A | -1.0078 | |
| 108 | R | A | -0.9294 | |
| 109 | T | A | 0.2116 | |
| 110 | V | A | 1.2420 | |
| 111 | A | A | 0.3654 | |
| 112 | A | A | -0.0455 | |
| 113 | P | A | 0.0000 | |
| 114 | S | A | -0.1183 | |
| 115 | V | A | 0.0000 | |
| 116 | F | A | -0.0275 | |
| 117 | I | A | 0.0000 | |
| 118 | F | A | 0.0000 | |
| 119 | P | A | 0.0000 | |
| 120 | P | A | 0.0000 | |
| 121 | S | A | 0.0000 | |
| 122 | D | A | -2.5936 | |
| 123 | E | A | -2.1258 | |
| 124 | Q | A | 0.0000 | |
| 125 | L | A | -1.9456 | |
| 126 | K | A | -2.5537 | |
| 127 | S | A | -1.5800 | |
| 128 | G | A | -1.3636 | |
| 129 | T | A | -0.9935 | |
| 130 | A | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | C | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | L | A | 0.0000 | |
| 137 | N | A | 0.0000 | |
| 138 | N | A | -0.8898 | |
| 139 | F | A | 0.0000 | |
| 140 | Y | A | 0.0000 | |
| 141 | P | A | -1.0802 | |
| 142 | R | A | -2.2650 | |
| 143 | E | A | -2.9300 | |
| 144 | A | A | 0.0000 | |
| 145 | K | A | -2.5083 | |
| 146 | V | A | 0.0000 | |
| 147 | Q | A | -0.8452 | |
| 148 | W | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | V | A | 0.0000 | |
| 151 | D | A | -1.7705 | |
| 152 | N | A | -1.3693 | |
| 153 | A | A | -0.0557 | |
| 154 | L | A | 0.8821 | |
| 155 | Q | A | 0.0158 | |
| 156 | S | A | -0.5151 | |
| 157 | G | A | -0.9782 | |
| 158 | N | A | -0.8844 | |
| 159 | S | A | -1.0068 | |
| 160 | Q | A | -1.1774 | |
| 161 | E | A | -1.3806 | |
| 162 | S | A | 0.0000 | |
| 163 | V | A | -0.4419 | |
| 164 | T | A | -1.0958 | |
| 165 | E | A | -2.2388 | |
| 166 | Q | A | -1.9331 | |
| 167 | D | A | -2.4464 | |
| 168 | S | A | -1.9929 | |
| 169 | K | A | -2.5335 | |
| 170 | D | A | -2.1875 | |
| 171 | S | A | 0.0000 | |
| 172 | T | A | 0.0000 | |
| 173 | Y | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | L | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | S | A | 0.0000 | |
| 178 | T | A | -0.5148 | |
| 179 | L | A | 0.0000 | |
| 180 | T | A | -0.2982 | |
| 181 | L | A | -0.1132 | |
| 182 | S | A | -0.7998 | |
| 183 | K | A | -1.8419 | |
| 184 | A | A | -1.3604 | |
| 185 | D | A | -1.7120 | |
| 186 | Y | A | -1.7217 | |
| 187 | E | A | -2.7559 | |
| 188 | K | A | -3.0397 | |
| 189 | H | A | -2.7349 | |
| 190 | K | A | -3.2984 | |
| 191 | V | A | -1.8888 | |
| 192 | Y | A | 0.0000 | |
| 193 | A | A | 0.0000 | |
| 194 | C | A | 0.0000 | |
| 195 | E | A | -0.5862 | |
| 196 | V | A | 0.0000 | |
| 197 | T | A | -1.2172 | |
| 198 | H | A | 0.0000 | |
| 199 | Q | A | -1.8781 | |
| 200 | G | A | -0.7648 | |
| 201 | L | A | -0.4829 | |
| 202 | S | A | -0.5249 | |
| 203 | S | A | -0.4552 | |
| 204 | P | A | -0.4877 | |
| 205 | V | A | -0.0707 | |
| 206 | T | A | -0.4485 | |
| 207 | K | A | -0.7320 | |
| 208 | S | A | -0.6503 | |
| 209 | F | A | 0.0000 | |
| 210 | N | A | -2.2032 | |
| 211 | R | A | -2.9112 | |
| 212 | G | A | -2.4438 | |
| 213 | E | A | -2.6821 | |
| 214 | C | A | -1.5390 | |
| 1 | E | A | -2.1879 | |
| 2 | V | A | -1.3175 | |
| 3 | Q | A | -1.2774 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1788 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.2511 | |
| 8 | G | A | -0.7206 | |
| 9 | G | A | -0.1226 | |
| 10 | G | A | 0.6289 | |
| 11 | L | A | 1.0997 | |
| 12 | I | A | -0.0086 | |
| 13 | Q | A | -1.1297 | |
| 14 | P | A | -1.4347 | |
| 15 | G | A | -1.2967 | |
| 16 | G | A | -1.3100 | |
| 17 | S | A | -1.5896 | |
| 18 | L | A | -1.2346 | |
| 19 | R | A | -2.1626 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4838 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1267 | |
| 24 | A | A | -0.3146 | |
| 25 | S | A | -0.9453 | |
| 26 | G | A | -1.1434 | |
| 27 | F | A | -0.4762 | |
| 28 | T | A | -0.5128 | |
| 29 | V | A | 0.0000 | |
| 30 | S | A | -1.2338 | |
| 30A | T | A | -0.8082 | |
| 30B | N | A | -0.3902 | |
| 30C | Y | A | 0.0063 | |
| 30D | V | A | 0.0000 | |
| 34 | S | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.7069 | |
| 39 | A | A | -0.8186 | |
| 40 | P | A | -0.8682 | |
| 41 | G | A | -1.4787 | |
| 42 | K | A | -2.2292 | |
| 43 | G | A | -1.3730 | |
| 44 | L | A | 0.0000 | |
| 45 | E | A | -0.9620 | |
| 46 | W | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | S | A | 0.0000 | |
| 49 | V | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | F | A | -0.0212 | |
| 51A | K | A | -1.5229 | |
| 51B | D | A | -2.1815 | |
| 54 | G | A | -1.5210 | |
| 55 | T | A | -0.5519 | |
| 56 | P | A | -0.0141 | |
| 57 | Y | A | 0.6384 | |
| 58 | Y | A | -0.5150 | |
| 59 | T | A | -1.3690 | |
| 60 | D | A | -2.5372 | |
| 61 | S | A | -1.8215 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.5678 | |
| 64 | G | A | -1.8138 | |
| 65 | R | A | -1.6564 | |
| 66 | F | A | 0.0000 | |
| 67 | T | A | -0.8761 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -1.0510 | |
| 70 | R | A | -2.1183 | |
| 71 | D | A | -2.1606 | |
| 72 | N | A | -2.5427 | |
| 73 | S | A | -1.9509 | |
| 74 | K | A | -2.5888 | |
| 75 | N | A | -1.9787 | |
| 76 | T | A | 0.0000 | |
| 77 | V | A | 0.0000 | |
| 78 | Y | A | -0.8065 | |
| 79 | F | A | 0.0000 | |
| 80 | E | A | -1.4796 | |
| 81 | M | A | 0.0000 | |
| 82 | D | A | -1.9596 | |
| 83 | S | A | -1.4525 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -1.5570 | |
| 86 | V | A | 0.0488 | |
| 87 | E | A | -1.4488 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | 0.1458 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.6879 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | R | A | 0.0000 | |
| 97 | V | A | 0.0000 | |
| 98 | M | A | 0.3796 | |
| 99 | S | A | 0.0686 | |
| 100 | G | A | 0.1078 | |
| 101 | S | A | 0.2362 | |
| 102 | Y | A | 0.3441 | |
| 102A | H | A | 0.0000 | |
| 103 | D | A | -0.1138 | |
| 104 | Y | A | 0.1123 | |
| 105 | W | A | -0.0791 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -1.2205 | |
| 108 | G | A | -0.4156 | |
| 109 | T | A | 0.2832 | |
| 110 | L | A | 0.9990 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | 0.0000 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.1773 | |
| 115 | S | A | -0.6326 | |
| 118 | A | A | -0.3280 | |
| 119 | S | A | -0.3319 | |
| 120 | T | A | -0.7597 | |
| 121 | K | A | -1.1300 | |
| 122 | G | A | -1.2679 | |
| 123 | P | A | 0.0000 | |
| 124 | S | A | -0.2409 | |
| 125 | V | A | -0.2017 | |
| 126 | F | A | 0.0000 | |
| 127 | P | A | -0.8053 | |
| 128 | L | A | 0.0000 | |
| 129 | A | A | 0.0000 | |
| 130 | P | A | 0.0000 | |
| 131 | S | A | -0.6693 | |
| 132 | S | A | -0.6985 | |
| 133 | K | A | -0.6116 | |
| 134 | S | A | -0.7260 | |
| 135 | T | A | -0.7671 | |
| 136 | S | A | -0.7338 | |
| 137 | G | A | -0.8456 | |
| 138 | G | A | -0.8409 | |
| 139 | T | A | -0.5771 | |
| 140 | A | A | 0.0000 | |
| 141 | A | A | 0.0000 | |
| 142 | L | A | 0.0000 | |
| 143 | G | A | 0.0000 | |
| 144 | C | A | 0.0000 | |
| 145 | L | A | 0.0000 | |
| 146 | V | A | 0.0000 | |
| 147 | K | A | 0.0000 | |
| 148 | D | A | -0.3891 | |
| 149 | Y | A | 0.0000 | |
| 150 | F | A | 0.0000 | |
| 151 | P | A | -0.4322 | |
| 152 | E | A | -0.6278 | |
| 153 | P | A | -0.8932 | |
| 154 | V | A | 0.0000 | |
| 155 | T | A | -0.6878 | |
| 156 | V | A | -0.3936 | |
| 157 | S | A | -0.3446 | |
| 158 | W | A | 0.0000 | |
| 159 | N | A | -0.7623 | |
| 160 | S | A | -0.7050 | |
| 161 | G | A | -0.4375 | |
| 162 | A | A | -0.1963 | |
| 163 | L | A | -0.0323 | |
| 164 | T | A | -0.1842 | |
| 165 | S | A | -0.1850 | |
| 166 | G | A | -0.2500 | |
| 167 | V | A | 0.1665 | |
| 168 | H | A | 0.0177 | |
| 169 | T | A | 0.0235 | |
| 170 | F | A | 0.0000 | |
| 171 | P | A | -0.4632 | |
| 172 | A | A | 0.0012 | |
| 173 | V | A | 0.0780 | |
| 174 | L | A | 0.3719 | |
| 175 | Q | A | -0.2156 | |
| 176 | S | A | -0.3936 | |
| 177 | S | A | -0.3475 | |
| 178 | G | A | -0.0764 | |
| 179 | L | A | -0.0697 | |
| 180 | Y | A | 0.0000 | |
| 181 | S | A | 0.0000 | |
| 182 | L | A | 0.0000 | |
| 183 | S | A | 0.0000 | |
| 184 | S | A | 0.0000 | |
| 185 | V | A | 0.0000 | |
| 186 | V | A | 0.0000 | |
| 187 | T | A | -0.1643 | |
| 188 | V | A | 0.0000 | |
| 189 | P | A | -0.5725 | |
| 190 | S | A | 0.0000 | |
| 191 | S | A | -0.8205 | |
| 192 | S | A | -0.6694 | |
| 193 | L | A | -0.7640 | |
| 194 | G | A | -0.9091 | |
| 195 | T | A | -0.8115 | |
| 196 | Q | A | -1.1869 | |
| 197 | T | A | -1.0273 | |
| 198 | Y | A | 0.0000 | |
| 199 | I | A | -0.9220 | |
| 200 | C | A | 0.0000 | |
| 201 | N | A | 0.0000 | |
| 202 | V | A | 0.0000 | |
| 203 | N | A | -1.9594 | |
| 204 | H | A | 0.0000 | |
| 205 | K | A | -2.7729 | |
| 206 | P | A | -1.6173 | |
| 207 | S | A | -1.8703 | |
| 208 | N | A | -2.5773 | |
| 209 | T | A | -2.0092 | |
| 210 | K | A | -2.5403 | |
| 211 | V | A | -1.3074 | |
| 212 | D | A | -2.4046 | |
| 213 | K | A | -1.9077 | |
| 214 | R | A | -2.2701 | |
| 215 | V | A | 0.0000 | |
| 216 | E | A | -1.3284 | |
| 217 | P | A | -0.7799 | |
| 218 | K | A | -0.9302 | |
| 219 | S | A | -1.2437 | |
| 220 | C | A | -1.5859 | |
| 221 | D | A | -2.7162 | |
| 222 | K | A | -2.5705 | |
| 223 | T | A | -1.4496 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine