Project name: a3full

Status: done

Started: 2024-04-23 07:21:18
Settings
Chain sequence(s) A: MEFVAKLFKFFKDLLGKFLGNN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:25)
Show buried residues

Minimal score value
-2.0747
Maximal score value
1.7656
Average score
0.03
Total score value
0.6595

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.6696
2 E A -0.7352
3 F A 1.0397
4 V A 1.0718
5 A A -0.1112
6 K A -0.8715
7 L A 0.9228
8 F A 1.4536
9 K A -0.8408
10 F A 1.0466
11 F A 0.8509
12 K A -1.1965
13 D A -1.3109
14 L A 0.3961
15 L A 1.1474
16 G A -0.4453
17 K A -1.0551
18 F A 1.7656
19 L A 1.3577
20 G A -0.4125
21 N A -2.0086
22 N A -2.0747
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Laboratory of Theory of Biopolymers 2018