Project name: 6m6e

Status: done

Started: 2024-04-29 10:57:39
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Chain sequence(s) A: GQVRQRYLYTDDAQQTEAHLEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLHFDPEACSFRELLLEDGYNVYQSEAHGLPLHLPGNKSPHRDPAPRGPARFLPLPG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:13)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-4.0304
Maximal score value
1.2331
Average score
-1.1854
Total score value
-151.7281

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
14 G A -1.2402
15 Q A -1.4114
16 V A -1.1182
17 R A -2.6453
18 Q A -2.1147
19 R A -1.2143
20 Y A -0.3738
21 L A 0.0000
22 Y A -0.8208
23 T A 0.0000
24 D A -2.5088
25 D A -3.3046
26 A A -2.9652
27 Q A -3.1823
28 Q A -2.7903
29 T A -2.3642
30 E A -3.3533
31 A A -2.4214
32 H A -1.4964
33 L A 0.0000
34 E A -1.4401
35 I A 0.0000
36 R A -3.7318
37 E A -4.0304
38 D A -3.3148
39 G A 0.0000
40 T A -1.5980
41 V A 0.0000
42 G A -0.8706
43 G A -1.3950
44 A A -1.3830
45 A A -1.5241
46 D A -2.6328
47 Q A -1.9796
48 S A -1.3564
49 P A -0.9775
50 E A -1.6289
51 S A 0.0000
52 L A -0.6279
53 L A 0.0000
54 Q A -0.8710
55 L A -1.1030
56 K A -1.1641
57 A A -0.9810
58 L A -0.6549
59 K A -1.9073
60 P A -1.4032
61 G A -1.6912
62 V A -1.7275
63 I A 0.0000
64 Q A 0.0000
65 I A 0.0000
66 L A 0.2580
67 G A 0.0000
68 V A -0.3089
69 K A -2.0219
70 T A -1.7960
71 S A -0.5548
72 R A -0.4262
73 F A 0.7378
74 L A 0.0000
75 C A 0.0000
76 Q A 0.0000
77 R A -2.4515
78 P A -2.2589
79 D A -2.4089
80 G A 0.0000
81 A A -1.1623
82 L A 0.0000
83 Y A -0.4082
84 G A 0.0000
85 S A 0.2880
86 L A 1.2331
87 H A 0.2167
88 F A 0.5996
89 D A -0.9816
90 P A -1.3332
91 E A -2.7269
92 A A -1.8682
93 C A 0.0000
94 S A 0.0000
95 F A 0.0000
96 R A -2.7193
97 E A -1.0925
98 L A 0.2077
99 L A 1.0265
100 L A -0.1597
101 E A -2.0338
102 D A -2.3365
103 G A -1.2619
104 Y A -0.5200
105 N A -0.0480
106 V A 0.0000
107 Y A 0.0000
108 Q A -1.5524
109 S A 0.0000
110 E A -3.1666
111 A A -2.2630
112 H A -1.9312
113 G A -1.6363
114 L A -1.3082
115 P A -0.9602
116 L A 0.0000
117 H A -0.7020
118 L A -0.5809
119 P A -1.0414
120 G A -1.8063
121 N A -2.4240
122 K A -3.5148
123 S A -2.4323
124 P A -2.6247
125 H A -2.8144
126 R A -3.6336
127 D A -3.6052
128 P A -2.1431
129 A A -1.0530
130 P A -1.0974
131 R A -1.5265
132 G A -1.2247
133 P A -0.9562
134 A A 0.0000
135 R A -1.7482
136 F A 0.0000
137 L A -0.0609
138 P A -0.0780
139 L A 0.0349
140 P A -0.8987
141 G A -1.3477
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Laboratory of Theory of Biopolymers 2018