Project name: cl3

Status: done

Started: 2024-04-19 07:15:09
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Chain sequence(s) H: QVQLQESGGGVVQPGRSLRLSCAASGFTFSSYAIHWVRQAPGKGLEWVAVISYDGSNRYYADSVKGRFTISRDNSKNTLYLQMNSLRPEDTAVYYCARDRFSAVASTPTYHNYFYMDVWGKGTTVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-1.9897
Maximal score value
2.275
Average score
-0.2331
Total score value
-30.0663

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.1158
2 V H -0.0475
3 Q H -1.1156
4 L H 0.0000
5 Q H -0.5993
6 E H 0.0000
7 S H -0.2243
8 G H -0.4582
9 G H -0.2960
11 G H 0.0772
12 V H 1.7317
13 V H 0.0000
14 Q H -1.2271
15 P H -0.4597
16 G H -0.8501
17 R H -1.9564
18 S H -0.5204
19 L H 0.0189
20 R H -1.0459
21 L H 0.0000
22 S H -0.0070
23 C H 0.0000
24 A H 0.0458
25 A H 0.0000
26 S H -0.2631
27 G H -0.3870
28 F H 0.1878
29 T H -0.0197
30 F H 0.0000
35 S H -0.1533
36 S H -0.1836
37 Y H 0.3118
38 A H 0.0000
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4093
45 A H 0.0000
46 P H -0.3389
47 G H -0.7115
48 K H -1.2958
49 G H -0.5920
50 L H 0.2447
51 E H -0.3153
52 W H 0.1203
53 V H 0.0000
54 A H 0.0000
55 V H 0.0000
56 I H 0.0000
57 S H 0.0714
58 Y H 0.3059
59 D H -1.5234
62 G H -0.3993
63 S H -0.3163
64 N H -0.8321
65 R H -1.6222
66 Y H 0.1751
67 Y H 0.3131
68 A H -0.2693
69 D H -1.9897
70 S H -0.4557
71 V H 0.0000
72 K H -1.9703
74 G H -0.8176
75 R H -0.3452
76 F H 0.0000
77 T H -0.0740
78 I H 0.0000
79 S H -0.0912
80 R H -0.2928
81 D H -0.5433
82 N H -0.6645
83 S H -0.5966
84 K H -1.8831
85 N H -1.1669
86 T H -0.1483
87 L H 0.0000
88 Y H 0.2562
89 L H 0.0000
90 Q H -0.4277
91 M H 0.0000
92 N H -0.4738
93 S H -0.3233
94 L H 0.0000
95 R H -1.8420
96 P H -0.8641
97 E H -1.6932
98 D H 0.0000
99 T H -0.0176
100 A H 0.0000
101 V H 0.4690
102 Y H 0.0000
103 Y H 0.1851
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 D H 0.0000
108 R H -1.4900
109 F H 1.5661
110 S H 0.1397
111 A H 0.2936
111A V H 1.7835
111B A H 0.3337
111C S H -0.2145
111D T H -0.1100
112E P H -0.0878
112D T H -0.0385
112C Y H 0.0466
112B H H -1.0953
112A N H -0.7481
112 Y H 1.5054
113 F H 2.2750
114 Y H 0.9349
115 M H 0.0000
116 D H -1.2489
117 V H 0.0247
118 W H 0.3985
119 G H -0.3140
120 K H -1.7277
121 G H -0.3580
122 T H -0.0344
123 T H -0.0018
124 V H 0.0000
125 T H 0.1827
126 V H 0.0000
127 S H -0.1298
128 S H -0.2296
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Laboratory of Theory of Biopolymers 2018