Project name: 71bd422ff471a69 [mutate: SA5A, VR7A] [mutate: IG28A]

Status: done

Started: 2024-04-29 13:18:15
Settings
Chain sequence(s) A: AARKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues IG28A
Energy difference between WT (input) and mutated protein (by FoldX) 1.95943 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:14)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:21)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:37)
Show buried residues

Minimal score value
-3.7755
Maximal score value
0.0
Average score
-1.6324
Total score value
-89.7839

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 A A -1.4053
6 A A -1.9226
7 R A -2.4439
8 K A -2.7787
9 A A 0.0000
10 L A -0.9296
11 F A -0.7297
12 D A -2.2524
13 Y A 0.0000
14 K A -2.5619
15 A A -2.4622
16 Q A -3.0739
17 R A -3.7755
18 E A -3.3459
19 D A -2.7200
20 E A 0.0000
21 L A 0.0000
22 T A -1.2411
23 F A 0.0000
24 T A -1.8728
25 K A -2.1618
26 S A -1.7047
27 A A 0.0000
28 G A -1.9068 mutated: IG28A
29 I A 0.0000
30 Q A -2.3134
31 N A -2.5308
32 V A -2.3020
33 E A -3.0249
34 K A -3.2701
35 Q A -2.6437
36 D A -2.5735
37 G A -1.6805
38 G A -1.3371
39 W A -0.9907
40 W A -1.5970
41 R A -1.8868
42 G A 0.0000
43 D A -2.1226
44 Y A -1.2198
45 G A -1.0766
46 G A -1.3490
47 K A -1.8844
48 K A -2.6732
49 Q A -1.9773
50 L A -1.2240
51 W A -0.8765
52 F A 0.0000
53 P A 0.0000
54 S A -1.3248
55 N A -1.2403
56 Y A -0.9468
57 V A 0.0000
58 E A -3.2875
59 E A -3.1418
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018