| Chain sequence(s) |
A: DIQMTQSPSFLSASVGDRVTITCRASQNIEGWLAWYQQKPGKAPELLIYKASRLQSGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCQYYQRFPLTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVQLVESGGGLVQPGGSLRLSCAASGFTFSNYDMAWVRQAPGKGLEWVASISPGGDNTYYRDSVKGRFTISRDDAKNSLYLQMNSLRAEDTAVYYCATDYNSYIPFVYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:33)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:33)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:33)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:33)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:34)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:36)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:37)
[INFO] Main: Simulation completed successfully. (00:01:59)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.4520 | |
| 2 | I | A | 0.0000 | |
| 3 | Q | A | -1.9468 | |
| 4 | M | A | 0.0000 | |
| 5 | T | A | -1.4986 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.4735 | |
| 8 | P | A | 0.3367 | |
| 9 | S | A | 0.2693 | |
| 10 | F | A | 1.3629 | |
| 11 | L | A | 0.8781 | |
| 12 | S | A | -0.1473 | |
| 13 | A | A | 0.0000 | |
| 14 | S | A | -0.6366 | |
| 15 | V | A | 0.1150 | |
| 16 | G | A | -0.7694 | |
| 17 | D | A | -1.5384 | |
| 18 | R | A | -2.2128 | |
| 19 | V | A | 0.0000 | |
| 20 | T | A | -0.5333 | |
| 21 | I | A | 0.0000 | |
| 22 | T | A | -0.7614 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -2.7826 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -1.7721 | |
| 27 | Q | A | -2.1854 | |
| 28 | N | A | -2.4693 | |
| 29 | I | A | 0.0000 | |
| 30A | E | A | -2.1692 | |
| 31 | G | A | -1.3108 | |
| 32 | W | A | -0.6000 | |
| 33 | L | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | -0.8171 | |
| 38 | Q | A | 0.0000 | |
| 39 | K | A | -1.5580 | |
| 40 | P | A | -1.4825 | |
| 41 | G | A | -1.5127 | |
| 42 | K | A | -2.5996 | |
| 43 | A | A | -1.6036 | |
| 44 | P | A | 0.0000 | |
| 45 | E | A | -1.4617 | |
| 46 | L | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | -0.6181 | |
| 50 | K | A | -1.2884 | |
| 51 | A | A | 0.0000 | |
| 52 | S | A | -1.3112 | |
| 53 | R | A | -1.9754 | |
| 54 | L | A | -0.8103 | |
| 55 | Q | A | -0.6802 | |
| 56 | S | A | -0.6062 | |
| 57 | G | A | -0.6477 | |
| 58 | V | A | -0.3866 | |
| 59 | P | A | -0.4548 | |
| 60 | S | A | -0.4277 | |
| 61 | R | A | -0.7272 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.5907 | |
| 64 | G | A | -0.7871 | |
| 65 | S | A | -1.0043 | |
| 66 | G | A | -1.4211 | |
| 67 | S | A | -1.6414 | |
| 68 | G | A | -1.9042 | |
| 69 | T | A | -2.1241 | |
| 70 | D | A | -2.3067 | |
| 71 | Y | A | 0.0000 | |
| 72 | T | A | -0.7202 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.5365 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.1568 | |
| 77 | S | A | -1.2684 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -1.2987 | |
| 80 | P | A | -0.7837 | |
| 81 | E | A | -1.4302 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | -0.1646 | |
| 84 | A | A | 0.0000 | |
| 85 | T | A | -0.1062 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Q | A | 0.0000 | |
| 90 | Y | A | 0.0000 | |
| 91 | Y | A | -0.0918 | |
| 92 | Q | A | -1.1821 | |
| 93 | R | A | -0.9599 | |
| 94 | F | A | 0.2109 | |
| 95 | P | A | -0.1186 | |
| 96 | L | A | 0.0000 | |
| 97 | T | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | Q | A | -1.6952 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | 0.2339 | |
| 104 | L | A | 0.0000 | |
| 105 | E | A | 0.0000 | |
| 106 | I | A | -0.3903 | |
| 107 | K | A | -1.3362 | |
| 108 | R | A | -1.4500 | |
| 109 | T | A | -0.1480 | |
| 110 | V | A | 1.0084 | |
| 111 | A | A | 0.3612 | |
| 112 | A | A | 0.0221 | |
| 113 | P | A | 0.0000 | |
| 114 | S | A | -0.1565 | |
| 115 | V | A | 0.0000 | |
| 116 | F | A | -0.0325 | |
| 117 | I | A | 0.0000 | |
| 118 | F | A | 0.0000 | |
| 119 | P | A | 0.0000 | |
| 120 | P | A | 0.0000 | |
| 121 | S | A | 0.0000 | |
| 122 | D | A | -2.5705 | |
| 123 | E | A | -2.0848 | |
| 124 | Q | A | 0.0000 | |
| 125 | L | A | -1.8119 | |
| 126 | K | A | -2.5419 | |
| 127 | S | A | -1.5545 | |
| 128 | G | A | -1.3345 | |
| 129 | T | A | -0.9573 | |
| 130 | A | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | C | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | L | A | 0.0000 | |
| 137 | N | A | 0.0000 | |
| 138 | N | A | -1.0364 | |
| 139 | F | A | 0.0000 | |
| 140 | Y | A | 0.0000 | |
| 141 | P | A | -0.7717 | |
| 142 | R | A | -1.0340 | |
| 143 | E | A | -1.5665 | |
| 144 | A | A | 0.0000 | |
| 145 | K | A | -1.9623 | |
| 146 | V | A | 0.0000 | |
| 147 | Q | A | -0.8355 | |
| 148 | W | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | V | A | 0.0000 | |
| 151 | D | A | -1.9283 | |
| 152 | N | A | -1.4759 | |
| 153 | A | A | -0.1098 | |
| 154 | L | A | 0.8547 | |
| 155 | Q | A | 0.0107 | |
| 156 | S | A | -0.5193 | |
| 157 | G | A | -0.9789 | |
| 158 | N | A | -0.8910 | |
| 159 | S | A | -1.0084 | |
| 160 | Q | A | -1.0794 | |
| 161 | E | A | -1.3619 | |
| 162 | S | A | 0.0000 | |
| 163 | V | A | -0.4302 | |
| 164 | T | A | -0.9618 | |
| 165 | E | A | -2.0664 | |
| 166 | Q | A | -1.9054 | |
| 167 | D | A | -2.4563 | |
| 168 | S | A | -1.9337 | |
| 169 | K | A | -2.5137 | |
| 170 | D | A | -2.2228 | |
| 171 | S | A | 0.0000 | |
| 172 | T | A | 0.0000 | |
| 173 | Y | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | L | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | S | A | 0.0000 | |
| 178 | T | A | -0.5175 | |
| 179 | L | A | 0.0000 | |
| 180 | T | A | -0.2808 | |
| 181 | L | A | -0.1096 | |
| 182 | S | A | -0.7911 | |
| 183 | K | A | -1.8187 | |
| 184 | A | A | -1.3581 | |
| 185 | D | A | -1.7177 | |
| 186 | Y | A | -1.7998 | |
| 187 | E | A | -2.8161 | |
| 188 | K | A | -3.0672 | |
| 189 | H | A | -2.7673 | |
| 190 | K | A | -3.3567 | |
| 191 | V | A | -1.9508 | |
| 192 | Y | A | 0.0000 | |
| 193 | A | A | 0.0000 | |
| 194 | C | A | 0.0000 | |
| 195 | E | A | -0.6994 | |
| 196 | V | A | 0.0000 | |
| 197 | T | A | -0.9831 | |
| 198 | H | A | 0.0000 | |
| 199 | Q | A | -1.3770 | |
| 200 | G | A | -0.3206 | |
| 201 | L | A | -0.1993 | |
| 202 | S | A | -0.4596 | |
| 203 | S | A | -0.4312 | |
| 204 | P | A | -0.3864 | |
| 205 | V | A | -0.0546 | |
| 206 | T | A | -0.4398 | |
| 207 | K | A | -0.6943 | |
| 208 | S | A | -0.6442 | |
| 209 | F | A | 0.0000 | |
| 210 | N | A | -2.1967 | |
| 211 | R | A | -2.9347 | |
| 212 | G | A | -2.4798 | |
| 213 | E | A | -2.4979 | |
| 214 | C | A | -1.5522 | |
| 1 | E | A | -2.0210 | |
| 2 | V | A | -0.9223 | |
| 3 | Q | A | -1.1251 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7563 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.3791 | |
| 8 | G | A | -0.7721 | |
| 9 | G | A | -0.1441 | |
| 10 | G | A | 0.3172 | |
| 11 | L | A | 0.7622 | |
| 12 | V | A | -0.2197 | |
| 13 | Q | A | -1.3487 | |
| 14 | P | A | -1.1991 | |
| 15 | G | A | -1.2258 | |
| 16 | G | A | -0.8641 | |
| 17 | S | A | -0.9980 | |
| 18 | L | A | -1.0387 | |
| 19 | R | A | -2.1267 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4169 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1991 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.9025 | |
| 26 | G | A | -1.0905 | |
| 27 | F | A | -0.7075 | |
| 28 | T | A | -0.6298 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.2719 | |
| 30A | N | A | -1.6421 | |
| 31 | Y | A | -0.9156 | |
| 32 | D | A | -0.5930 | |
| 33 | M | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.6491 | |
| 39 | A | A | -0.7686 | |
| 40 | P | A | -0.8019 | |
| 41 | G | A | -1.4685 | |
| 42 | K | A | -2.2800 | |
| 43 | G | A | -1.5580 | |
| 44 | L | A | 0.0000 | |
| 45 | E | A | -0.8124 | |
| 46 | W | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | -1.2085 | |
| 51A | P | A | -1.4648 | |
| 52 | G | A | -1.7465 | |
| 53 | G | A | -1.8754 | |
| 54 | D | A | -2.4960 | |
| 55 | N | A | -1.7952 | |
| 56 | T | A | -0.6116 | |
| 57 | Y | A | 0.5200 | |
| 58 | Y | A | -0.0047 | |
| 59 | R | A | -1.0952 | |
| 60 | D | A | -2.0860 | |
| 61 | S | A | -1.5243 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.2888 | |
| 64 | G | A | -1.4872 | |
| 65 | R | A | 0.0000 | |
| 66 | F | A | 0.0000 | |
| 67 | T | A | -0.4198 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.6865 | |
| 70 | R | A | -1.2614 | |
| 71 | D | A | -1.4362 | |
| 72 | D | A | -1.9797 | |
| 73 | A | A | -1.3882 | |
| 74 | K | A | -2.2814 | |
| 75 | N | A | -1.7290 | |
| 76 | S | A | -0.9631 | |
| 77 | L | A | 0.0000 | |
| 78 | Y | A | -0.5419 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -1.2538 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.0952 | |
| 83 | S | A | -0.9066 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -1.2185 | |
| 86 | A | A | -0.5968 | |
| 87 | E | A | -0.8569 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | 0.0504 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.6293 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | T | A | 0.0000 | |
| 102A | D | A | -0.2542 | |
| 102B | Y | A | -0.3528 | |
| 102C | N | A | -1.0513 | |
| 102D | S | A | -0.5290 | |
| 102E | Y | A | -0.2612 | |
| 102F | I | A | 0.5601 | |
| 102G | P | A | 0.0000 | |
| 102H | F | A | 0.0000 | |
| 103 | V | A | 0.0000 | |
| 104 | Y | A | 0.0946 | |
| 105 | W | A | -0.1433 | |
| 106 | G | A | -0.4481 | |
| 107 | R | A | -1.7735 | |
| 108 | G | A | 0.0000 | |
| 109 | T | A | 0.0000 | |
| 110 | L | A | 1.0999 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | 0.0000 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.5816 | |
| 115 | S | A | -0.6214 | |
| 120 | A | A | -0.4111 | |
| 121 | S | A | -0.4637 | |
| 122 | T | A | -0.5047 | |
| 123 | K | A | -0.9836 | |
| 124 | G | A | -1.3146 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | -0.1694 | |
| 127 | V | A | -0.1075 | |
| 128 | F | A | -0.4036 | |
| 129 | P | A | -0.6855 | |
| 130 | L | A | 0.0000 | |
| 131 | A | A | 0.0000 | |
| 132 | P | A | 0.0000 | |
| 133 | S | A | -0.5970 | |
| 134 | S | A | -0.7020 | |
| 135 | K | A | -0.5788 | |
| 136 | S | A | -0.7217 | |
| 137 | T | A | -0.7658 | |
| 138 | S | A | -0.7365 | |
| 139 | G | A | -0.8605 | |
| 140 | G | A | -0.8478 | |
| 141 | T | A | -0.6023 | |
| 142 | A | A | 0.0000 | |
| 143 | A | A | 0.0000 | |
| 144 | L | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | C | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | D | A | -0.2882 | |
| 151 | Y | A | 0.0000 | |
| 152 | F | A | 0.0000 | |
| 153 | P | A | -0.3914 | |
| 154 | E | A | -0.5278 | |
| 155 | P | A | -0.8957 | |
| 156 | V | A | 0.0000 | |
| 157 | T | A | -0.6997 | |
| 158 | V | A | -0.3963 | |
| 159 | S | A | -0.3324 | |
| 160 | W | A | 0.0000 | |
| 161 | N | A | -0.7444 | |
| 162 | S | A | -0.6828 | |
| 163 | G | A | -0.4068 | |
| 164 | A | A | -0.1817 | |
| 165 | L | A | -0.0199 | |
| 166 | T | A | -0.1804 | |
| 167 | S | A | -0.1903 | |
| 168 | G | A | -0.2859 | |
| 169 | V | A | 0.1629 | |
| 170 | H | A | -0.0256 | |
| 171 | T | A | 0.0310 | |
| 172 | F | A | 0.0000 | |
| 173 | P | A | -0.3309 | |
| 174 | A | A | 0.1681 | |
| 175 | V | A | 0.4554 | |
| 176 | L | A | 1.1426 | |
| 177 | Q | A | 0.1746 | |
| 178 | S | A | -0.1902 | |
| 179 | S | A | -0.1612 | |
| 180 | G | A | -0.0203 | |
| 181 | L | A | 0.1331 | |
| 182 | Y | A | 0.0000 | |
| 183 | S | A | 0.0000 | |
| 184 | L | A | 0.0000 | |
| 185 | S | A | 0.0000 | |
| 186 | S | A | 0.0000 | |
| 187 | V | A | 0.0000 | |
| 188 | V | A | 0.0000 | |
| 189 | T | A | -0.1890 | |
| 190 | V | A | 0.0000 | |
| 191 | P | A | -0.5774 | |
| 192 | S | A | 0.0000 | |
| 193 | S | A | -0.8212 | |
| 194 | S | A | -0.6786 | |
| 195 | L | A | -0.7431 | |
| 196 | G | A | -0.8931 | |
| 197 | T | A | -0.8035 | |
| 198 | Q | A | -1.1747 | |
| 199 | T | A | -1.0027 | |
| 200 | Y | A | 0.0000 | |
| 201 | I | A | -0.8505 | |
| 202 | C | A | 0.0000 | |
| 203 | N | A | 0.0000 | |
| 204 | V | A | 0.0000 | |
| 205 | N | A | -2.0667 | |
| 206 | H | A | 0.0000 | |
| 207 | K | A | -2.7942 | |
| 208 | P | A | -1.6040 | |
| 209 | S | A | -1.8368 | |
| 210 | N | A | -2.5604 | |
| 211 | T | A | -2.0634 | |
| 212 | K | A | -2.7108 | |
| 213 | V | A | -1.3789 | |
| 214 | D | A | -2.4210 | |
| 215 | K | A | -1.9427 | |
| 216 | R | A | -2.2189 | |
| 217 | V | A | 0.0000 | |
| 218 | E | A | -1.2808 | |
| 219 | P | A | -0.7390 | |
| 220 | K | A | -0.6834 | |
| 221 | S | A | -1.2197 | |
| 222 | C | A | -1.5744 | |
| 223 | D | A | -2.5339 | |
| 224 | K | A | -2.5779 | |
| 225 | T | A | -1.4410 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine