Project name: 1A5R_Valen

Status: done

Started: 2020-02-17 14:25:20
Settings
Chain sequence(s) A: GSMSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGGHSTV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:44)
[INFO]       Movie:    Creting movie with webm format                                              (00:04:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:26)
Show buried residues

Minimal score value
-4.6836
Maximal score value
1.3883
Average score
-1.6967
Total score value
-174.7599

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
-1 G A -0.8533
0 S A -1.1754
1 M A -0.2016
2 S A -1.5461
3 D A -2.8581
4 Q A -3.0770
5 E A -3.0112
6 A A -1.9517
7 K A -2.7046
8 P A -1.9638
9 S A -1.5314
10 T A -1.5495
11 E A -2.7723
12 D A -2.6042
13 L A -0.7353
14 G A -1.9695
15 D A -3.4412
16 K A -3.9590
17 K A -4.6836
18 E A -3.9092
19 G A -3.0553
20 E A -2.9559
21 Y A -2.0326
22 I A 0.0000
23 K A -2.8349
24 L A 0.0000
25 K A -1.1764
26 V A 0.0000
27 I A -0.8954
28 G A 0.0000
29 Q A -2.6047
30 D A -3.0765
31 S A -1.8575
32 S A -1.6748
33 E A -1.9612
34 I A -0.3384
35 H A -0.7655
36 F A 0.3935
37 K A -1.6079
38 V A -1.2573
39 K A -1.9587
40 M A -1.3945
41 T A -0.9056
42 T A -1.2759
43 H A -2.5161
44 L A 0.0000
45 K A -2.7510
46 K A -2.3225
47 L A 0.0000
48 K A -1.8679
49 E A -2.5969
50 S A -2.0875
51 Y A -1.7576
52 C A 0.0000
53 Q A -2.6458
54 R A -3.1219
55 Q A -2.5844
56 G A -1.9276
57 V A -0.9258
58 P A -0.9894
59 M A 0.3301
60 N A -1.3592
61 S A -1.7578
62 L A 0.0000
63 R A -1.8916
64 F A 0.0000
65 L A -1.6898
66 F A 0.0000
67 E A -2.7403
68 G A -2.1972
69 Q A -2.7447
70 R A -2.9046
71 I A -1.9107
72 A A -1.4491
73 D A -2.4070
74 N A -2.5370
75 H A -2.4206
76 T A -1.9238
77 P A -1.7262
78 K A -2.7709
79 E A -2.0282
80 L A 0.0000
81 G A -1.6629
82 M A -1.5223
83 E A -3.7676
84 E A -3.9728
85 E A -3.0344
86 D A 0.0000
87 V A -0.4419
88 I A 0.0000
89 E A -1.5745
90 V A 0.0000
91 Y A -1.6898
92 Q A -2.6411
93 E A -3.3622
94 Q A -2.8039
95 T A -1.8781
96 G A -1.4793
97 G A -1.1296
98 H A -1.1708
99 S A -0.3843
100 T A 0.3238
101 V A 1.3883
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Laboratory of Theory of Biopolymers 2018