| Chain sequence(s) |
A: DIQMTQSPSSLSASVGDRVTITCHASQNIEGWLAWYQQKPGKAPELLIYKASRLQSGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQYYQNFPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECEVKLVESGGGLVQPGGSLRLSCAASGFTFSNYDMAWVRQAPGKGLEWVASISPGGDNTYYRDSVKGRFTISRDNAKSSLYLQMNSLRAEDTAVYYCATDYNSYIPFVYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:30)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:30)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:31)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:31)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:31)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:33)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:34)
[INFO] Main: Simulation completed successfully. (00:01:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.2277 | |
| 2 | I | A | -1.2805 | |
| 3 | Q | A | -1.9572 | |
| 4 | M | A | 0.0000 | |
| 5 | T | A | -1.0254 | |
| 6 | Q | A | -0.6147 | |
| 7 | S | A | -0.5352 | |
| 8 | P | A | -0.4317 | |
| 9 | S | A | -0.5821 | |
| 10 | S | A | -0.4214 | |
| 11 | L | A | -0.1589 | |
| 12 | S | A | -0.5991 | |
| 13 | A | A | 0.0000 | |
| 14 | S | A | -0.2630 | |
| 15 | V | A | 0.6657 | |
| 16 | G | A | -0.3817 | |
| 17 | D | A | -1.1616 | |
| 18 | R | A | -1.9653 | |
| 19 | V | A | -0.8950 | |
| 20 | T | A | -0.4430 | |
| 21 | I | A | 0.0000 | |
| 22 | T | A | -0.6777 | |
| 23 | C | A | 0.0000 | |
| 24 | H | A | -1.8122 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -1.7491 | |
| 27 | Q | A | -2.1796 | |
| 28 | N | A | -2.6782 | |
| 29 | I | A | 0.0000 | |
| 30A | E | A | -2.7733 | |
| 31 | G | A | -1.6045 | |
| 32 | W | A | -0.4823 | |
| 33 | L | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | -0.7242 | |
| 38 | Q | A | 0.0000 | |
| 39 | K | A | -1.4660 | |
| 40 | P | A | -1.3914 | |
| 41 | G | A | -1.5073 | |
| 42 | K | A | -2.5756 | |
| 43 | A | A | -1.6482 | |
| 44 | P | A | 0.0000 | |
| 45 | E | A | -1.3103 | |
| 46 | L | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | -0.3732 | |
| 50 | K | A | -0.9420 | |
| 51 | A | A | 0.0000 | |
| 52 | S | A | -1.1671 | |
| 53 | R | A | -1.8324 | |
| 54 | L | A | -0.6356 | |
| 55 | Q | A | -0.5854 | |
| 56 | S | A | -0.6835 | |
| 57 | G | A | -0.5045 | |
| 58 | V | A | -0.3316 | |
| 59 | P | A | -0.3754 | |
| 60 | S | A | -0.4545 | |
| 61 | R | A | -0.7368 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.5644 | |
| 64 | G | A | -0.6358 | |
| 65 | S | A | -1.0401 | |
| 66 | G | A | -1.4735 | |
| 67 | S | A | -1.9162 | |
| 68 | G | A | -2.2574 | |
| 69 | T | A | -2.3236 | |
| 70 | D | A | -2.7495 | |
| 71 | Y | A | 0.0000 | |
| 72 | T | A | -0.7261 | |
| 73 | F | A | 0.0000 | |
| 74 | T | A | -0.5323 | |
| 75 | I | A | 0.0000 | |
| 76 | S | A | -1.2184 | |
| 77 | S | A | -1.0009 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -0.4557 | |
| 80 | P | A | -0.6663 | |
| 81 | E | A | -1.6161 | |
| 82 | D | A | 0.0000 | |
| 83 | I | A | -0.3510 | |
| 84 | A | A | 0.0000 | |
| 85 | T | A | -0.3216 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Q | A | 0.0000 | |
| 90 | Y | A | 0.0000 | |
| 91 | Y | A | 0.5245 | |
| 92 | Q | A | -0.5379 | |
| 93 | N | A | 0.3287 | |
| 94 | F | A | 1.8004 | |
| 95 | P | A | 0.7173 | |
| 96 | L | A | 0.0000 | |
| 97 | T | A | 0.0000 | |
| 98 | F | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | G | A | -1.1447 | |
| 101 | G | A | -0.8356 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.3966 | |
| 104 | V | A | 0.0000 | |
| 105 | E | A | 0.0000 | |
| 106 | I | A | -0.8139 | |
| 107 | K | A | -1.1609 | |
| 108 | R | A | -1.3976 | |
| 109 | T | A | -0.1053 | |
| 110 | V | A | 1.0191 | |
| 111 | A | A | 0.2790 | |
| 112 | A | A | 0.0187 | |
| 113 | P | A | 0.0000 | |
| 114 | S | A | -0.1822 | |
| 115 | V | A | 0.0000 | |
| 116 | F | A | -0.0299 | |
| 117 | I | A | 0.0000 | |
| 118 | F | A | 0.0000 | |
| 119 | P | A | 0.0000 | |
| 120 | P | A | 0.0000 | |
| 121 | S | A | 0.0000 | |
| 122 | D | A | -2.5547 | |
| 123 | E | A | -2.0616 | |
| 124 | Q | A | 0.0000 | |
| 125 | L | A | -1.9422 | |
| 126 | K | A | -2.5395 | |
| 127 | S | A | -1.5671 | |
| 128 | G | A | -1.3551 | |
| 129 | T | A | -0.9759 | |
| 130 | A | A | 0.0000 | |
| 131 | S | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | V | A | 0.0000 | |
| 134 | C | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | L | A | 0.0000 | |
| 137 | N | A | 0.0000 | |
| 138 | N | A | -1.1028 | |
| 139 | F | A | 0.0000 | |
| 140 | Y | A | 0.0000 | |
| 141 | P | A | -1.1167 | |
| 142 | R | A | -1.9203 | |
| 143 | E | A | -2.7345 | |
| 144 | A | A | 0.0000 | |
| 145 | K | A | -2.5249 | |
| 146 | V | A | 0.0000 | |
| 147 | Q | A | -0.8677 | |
| 148 | W | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | V | A | 0.0000 | |
| 151 | D | A | -1.8512 | |
| 152 | N | A | -1.4157 | |
| 153 | A | A | -0.0839 | |
| 154 | L | A | 0.8646 | |
| 155 | Q | A | 0.0103 | |
| 156 | S | A | -0.5246 | |
| 157 | G | A | -0.9793 | |
| 158 | N | A | -0.8859 | |
| 159 | S | A | -1.0197 | |
| 160 | Q | A | -1.1261 | |
| 161 | E | A | -1.4509 | |
| 162 | S | A | 0.0000 | |
| 163 | V | A | -0.4530 | |
| 164 | T | A | -1.0675 | |
| 165 | E | A | -2.2088 | |
| 166 | Q | A | -1.8500 | |
| 167 | D | A | -2.2634 | |
| 168 | S | A | -2.0370 | |
| 169 | K | A | -2.3730 | |
| 170 | D | A | -2.2303 | |
| 171 | S | A | 0.0000 | |
| 172 | T | A | 0.0000 | |
| 173 | Y | A | 0.0000 | |
| 174 | S | A | 0.0000 | |
| 175 | L | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | S | A | 0.0000 | |
| 178 | T | A | -0.5376 | |
| 179 | L | A | 0.0000 | |
| 180 | T | A | -0.2828 | |
| 181 | L | A | -0.1029 | |
| 182 | S | A | -0.7805 | |
| 183 | K | A | -1.8045 | |
| 184 | A | A | -1.3443 | |
| 185 | D | A | -1.6975 | |
| 186 | Y | A | -1.8303 | |
| 187 | E | A | -2.7491 | |
| 188 | K | A | -3.0374 | |
| 189 | H | A | -2.7240 | |
| 190 | K | A | -3.2798 | |
| 191 | V | A | -1.8843 | |
| 192 | Y | A | 0.0000 | |
| 193 | A | A | 0.0000 | |
| 194 | C | A | 0.0000 | |
| 195 | E | A | -0.6025 | |
| 196 | V | A | 0.0000 | |
| 197 | T | A | -1.1938 | |
| 198 | H | A | 0.0000 | |
| 199 | Q | A | -1.7442 | |
| 200 | G | A | -0.4902 | |
| 201 | L | A | -0.3738 | |
| 202 | S | A | -0.4627 | |
| 203 | S | A | -0.4320 | |
| 204 | P | A | -0.4181 | |
| 205 | V | A | -0.0686 | |
| 206 | T | A | -0.4460 | |
| 207 | K | A | -0.6962 | |
| 208 | S | A | -0.6302 | |
| 209 | F | A | 0.0000 | |
| 210 | N | A | -2.1490 | |
| 211 | R | A | -2.8311 | |
| 212 | G | A | -2.6097 | |
| 213 | E | A | -2.9055 | |
| 214 | C | A | -1.5458 | |
| 1 | E | A | -2.1249 | |
| 2 | V | A | 0.0000 | |
| 3 | K | A | -1.5818 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.3024 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.3691 | |
| 8 | G | A | -0.6223 | |
| 9 | G | A | -0.0042 | |
| 10 | G | A | 0.5399 | |
| 11 | L | A | 1.0529 | |
| 12 | V | A | -0.2512 | |
| 13 | Q | A | -1.5690 | |
| 14 | P | A | -2.1157 | |
| 15 | G | A | -1.6294 | |
| 16 | G | A | -1.3591 | |
| 17 | S | A | -1.2802 | |
| 18 | L | A | -0.7449 | |
| 19 | R | A | -1.4708 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4243 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1692 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7401 | |
| 26 | G | A | -1.1766 | |
| 27 | F | A | -0.6338 | |
| 28 | T | A | -0.4170 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -1.3325 | |
| 30A | N | A | -1.6130 | |
| 31 | Y | A | -1.1404 | |
| 32 | D | A | -1.3525 | |
| 33 | M | A | 0.0000 | |
| 34 | A | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.5989 | |
| 39 | A | A | -1.0029 | |
| 40 | P | A | -0.9341 | |
| 41 | G | A | -1.4614 | |
| 42 | K | A | -2.2252 | |
| 43 | G | A | -1.4006 | |
| 44 | L | A | 0.0000 | |
| 45 | E | A | -0.8432 | |
| 46 | W | A | 0.0000 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | S | A | 0.0000 | |
| 50 | I | A | 0.0000 | |
| 51 | S | A | 0.0000 | |
| 51A | P | A | -1.6846 | |
| 52 | G | A | -1.7300 | |
| 53 | G | A | -2.0421 | |
| 54 | D | A | -2.4012 | |
| 55 | N | A | -1.7888 | |
| 56 | T | A | -0.7447 | |
| 57 | Y | A | 0.5861 | |
| 58 | Y | A | 0.3386 | |
| 59 | R | A | -0.6236 | |
| 60 | D | A | -1.4159 | |
| 61 | S | A | -1.3856 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.2479 | |
| 64 | G | A | -1.6070 | |
| 65 | R | A | -1.4407 | |
| 66 | F | A | 0.0000 | |
| 67 | T | A | -0.4308 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.6830 | |
| 70 | R | A | -1.4223 | |
| 71 | D | A | -2.0292 | |
| 72 | N | A | -2.3172 | |
| 73 | A | A | -1.6434 | |
| 74 | K | A | -2.3959 | |
| 75 | S | A | -1.7158 | |
| 76 | S | A | 0.0000 | |
| 77 | L | A | 0.0000 | |
| 78 | Y | A | 0.0000 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -1.0228 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.4359 | |
| 83 | S | A | -1.4323 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -2.9851 | |
| 86 | A | A | -1.9911 | |
| 87 | E | A | -2.4415 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.5349 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.7933 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | T | A | 0.0000 | |
| 102A | D | A | -0.3216 | |
| 102B | Y | A | -0.6759 | |
| 102C | N | A | -0.8729 | |
| 102D | S | A | -0.3452 | |
| 102E | Y | A | 0.0000 | |
| 102F | I | A | 0.9526 | |
| 102G | P | A | 0.0000 | |
| 102H | F | A | 0.2380 | |
| 103 | V | A | 0.0000 | |
| 104 | Y | A | -0.4992 | |
| 105 | W | A | 0.0000 | |
| 106 | G | A | 0.0000 | |
| 107 | R | A | -1.9810 | |
| 108 | G | A | -0.7768 | |
| 109 | T | A | 0.0000 | |
| 110 | L | A | 1.1339 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | 0.0000 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7490 | |
| 115 | S | A | -0.6510 | |
| 120 | A | A | -0.3591 | |
| 121 | S | A | -0.4611 | |
| 122 | T | A | -0.5991 | |
| 123 | K | A | -1.0854 | |
| 124 | G | A | -1.2895 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | -0.1887 | |
| 127 | V | A | -0.1219 | |
| 128 | F | A | -0.4149 | |
| 129 | P | A | -0.6837 | |
| 130 | L | A | 0.0000 | |
| 131 | A | A | 0.0000 | |
| 132 | P | A | 0.0000 | |
| 133 | S | A | -0.6565 | |
| 134 | S | A | -0.6900 | |
| 135 | K | A | -0.5714 | |
| 136 | S | A | -0.7201 | |
| 137 | T | A | -0.7603 | |
| 138 | S | A | -0.7252 | |
| 139 | G | A | -0.8394 | |
| 140 | G | A | -0.8368 | |
| 141 | T | A | -0.5950 | |
| 142 | A | A | 0.0000 | |
| 143 | A | A | 0.0000 | |
| 144 | L | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | C | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | D | A | -0.2980 | |
| 151 | Y | A | 0.0000 | |
| 152 | F | A | 0.0000 | |
| 153 | P | A | -0.3588 | |
| 154 | E | A | -0.6552 | |
| 155 | P | A | -0.9222 | |
| 156 | V | A | 0.0000 | |
| 157 | T | A | -0.6875 | |
| 158 | V | A | -0.3825 | |
| 159 | S | A | -0.3361 | |
| 160 | W | A | 0.0000 | |
| 161 | N | A | -0.7406 | |
| 162 | S | A | -0.6806 | |
| 163 | G | A | -0.4214 | |
| 164 | A | A | -0.1867 | |
| 165 | L | A | -0.0151 | |
| 166 | T | A | -0.1763 | |
| 167 | S | A | -0.1835 | |
| 168 | G | A | -0.2920 | |
| 169 | V | A | 0.1743 | |
| 170 | H | A | 0.0175 | |
| 171 | T | A | 0.0246 | |
| 172 | F | A | 0.0000 | |
| 173 | P | A | -0.4837 | |
| 174 | A | A | 0.1835 | |
| 175 | V | A | 0.4153 | |
| 176 | L | A | 1.0414 | |
| 177 | Q | A | 0.1175 | |
| 178 | S | A | -0.2253 | |
| 179 | S | A | -0.2075 | |
| 180 | G | A | -0.0582 | |
| 181 | L | A | 0.0879 | |
| 182 | Y | A | 0.0000 | |
| 183 | S | A | 0.0000 | |
| 184 | L | A | 0.0000 | |
| 185 | S | A | 0.0000 | |
| 186 | S | A | 0.0000 | |
| 187 | V | A | 0.0000 | |
| 188 | V | A | 0.0000 | |
| 189 | T | A | -0.1984 | |
| 190 | V | A | 0.0000 | |
| 191 | P | A | -0.5705 | |
| 192 | S | A | 0.0000 | |
| 193 | S | A | -0.8058 | |
| 194 | S | A | -0.6586 | |
| 195 | L | A | -0.7346 | |
| 196 | G | A | -0.8848 | |
| 197 | T | A | -0.7864 | |
| 198 | Q | A | -1.1379 | |
| 199 | T | A | -0.9787 | |
| 200 | Y | A | 0.0000 | |
| 201 | I | A | -0.8434 | |
| 202 | C | A | 0.0000 | |
| 203 | N | A | 0.0000 | |
| 204 | V | A | 0.0000 | |
| 205 | N | A | -2.0010 | |
| 206 | H | A | 0.0000 | |
| 207 | K | A | -2.7962 | |
| 208 | P | A | -1.6202 | |
| 209 | S | A | -1.8347 | |
| 210 | N | A | -2.5823 | |
| 211 | T | A | -2.0134 | |
| 212 | K | A | -2.5777 | |
| 213 | V | A | -1.3373 | |
| 214 | D | A | -2.4094 | |
| 215 | K | A | -1.8867 | |
| 216 | R | A | -2.2149 | |
| 217 | V | A | 0.0000 | |
| 218 | E | A | -1.2362 | |
| 219 | P | A | -0.7278 | |
| 220 | K | A | -0.8718 | |
| 221 | S | A | -1.2259 | |
| 222 | C | A | -1.6130 | |
| 223 | D | A | -2.7743 | |
| 224 | K | A | -2.7900 | |
| 225 | T | A | -1.4457 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine