Project name: CP_run

Status: done

Started: 2024-05-02 03:48:08
Settings
Chain sequence(s) A: GITRSGSELITTLKKNTDTEPKYTTAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPPNDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGAAQLGEVRVEYTVQLKNRTGSTSAQIGDFAGVKDGPRLVSWSKTKGTAGWEHDCHFLGTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQGVKMVTTEEQPKGKWQALRI
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:07)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:07)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:07)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:07)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:08)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-3.1772
Maximal score value
2.2503
Average score
-0.6249
Total score value
-166.836

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
81 G A -0.9068
82 I A -0.2584
83 T A -0.5739
84 R A -0.9686
85 S A -0.8429
86 G A -0.8747
87 S A -0.6104
88 E A -0.2444
89 L A 0.6198
90 I A 0.0000
91 T A -0.3397
92 T A -0.6941
93 L A -1.3607
94 K A -2.4924
95 K A -2.3898
96 N A -2.2583
97 T A -1.7785
98 D A -2.5303
99 T A -1.8005
100 E A -2.7187
101 P A 0.0000
102 K A -2.5277
103 Y A -0.6444
104 T A -0.2776
105 T A -0.4102
106 A A 0.0000
107 V A -0.1472
108 L A 0.0000
109 N A 0.0000
110 P A 0.0000
111 S A -0.7343
112 E A 0.0000
113 P A 0.0000
114 G A 0.0000
115 T A 0.0000
116 F A 0.0000
117 N A -1.2867
118 Q A -2.0058
119 L A 0.0000
120 I A -1.2599
121 K A -2.3345
122 E A -1.6711
123 A A -1.6612
124 A A -1.8260
125 Q A -2.4249
126 Y A -1.8581
127 E A -1.8999
128 K A -1.3895
129 Y A 0.0000
130 R A -1.3132
131 F A 0.0000
132 T A -0.6049
133 S A -0.6276
134 L A 0.0000
135 R A -1.4045
136 F A 0.0000
137 R A -1.2621
138 Y A 0.0000
139 S A -0.2614
140 P A 0.0439
141 M A 0.7331
142 S A 0.2557
143 P A 0.0436
144 S A 0.1050
145 T A -0.1801
146 T A 0.0000
147 G A -0.4607
148 G A -0.8561
149 K A -0.1813
150 V A 0.0000
151 A A 0.0000
152 L A 0.0000
153 A A 0.0000
154 F A 0.0000
155 D A -1.8927
156 R A -2.7621
157 D A -2.7048
158 A A 0.0000
159 A A -2.0832
160 K A -2.3519
161 P A -1.3349
162 P A -1.3150
163 P A -1.5905
164 N A -2.3703
165 D A -2.1685
166 L A -0.8402
167 A A -0.2282
168 S A -0.6380
169 L A 0.0000
170 Y A 0.4128
171 N A -0.6879
172 I A -0.2985
173 E A -0.7018
174 G A -0.1330
175 C A 0.7645
176 V A 1.0970
177 S A 0.6147
178 S A 0.3523
179 V A 0.2745
180 P A 0.0000
181 W A 1.0030
182 T A 0.3989
183 G A -0.1475
184 F A 0.0000
185 I A 0.1528
186 L A 0.0000
187 T A -0.3351
188 V A -0.7102
189 P A -0.7131
190 T A -0.8124
191 D A -1.4005
192 S A -1.1794
193 T A -1.2494
194 D A -2.1402
195 R A -0.7840
196 F A 0.0359
197 V A 0.0000
198 A A -0.5001
199 D A -1.4756
200 G A 0.0058
201 I A 1.1066
202 S A 0.1588
203 D A -0.7480
204 P A -1.1568
205 K A -1.9297
206 L A 0.3992
207 V A 0.0000
208 D A 0.0000
209 F A 0.0000
210 G A 0.0000
211 K A -1.2119
212 L A 0.0000
213 I A 0.0000
214 M A 0.0000
215 A A 0.0000
216 T A 0.0000
217 Y A -1.5980
218 G A -1.3965
219 Q A -1.2736
220 G A -1.0389
221 A A -0.9310
225 A A -1.3021
226 Q A -1.8510
227 L A 0.0000
228 G A 0.0000
229 E A -0.6369
230 V A 0.0000
231 R A -0.5086
232 V A 0.0000
233 E A -1.0278
234 Y A 0.0000
235 T A -0.7326
236 V A 0.0000
237 Q A -1.2504
238 L A 0.0000
239 K A -1.8940
240 N A -2.3553
241 R A -2.7511
242 T A -1.9275
243 G A -1.7199
244 S A -0.9509
245 T A -0.7303
246 S A 0.0537
248 A A 0.5639
249 Q A 1.4118
250 I A 1.6876
251 G A 0.0000
252 D A -1.5308
253 F A -1.4505
254 A A -0.9706
255 G A -0.7453
256 V A 0.4571
257 K A -1.5360
258 D A -2.1501
259 G A -1.3594
260 P A -0.8236
261 R A -0.9996
262 L A 1.1354
263 V A 1.0449
264 S A 0.5820
265 W A 0.4916
266 S A -0.4815
267 K A -1.8713
268 T A -1.8518
269 K A -2.2887
270 G A -1.8214
271 T A -0.9754
272 A A -1.3155
273 G A -1.4797
274 W A -1.7155
275 E A -1.8448
276 H A 0.0000
277 D A 0.0000
278 C A -1.0955
279 H A -1.0260
280 F A 0.1919
281 L A 0.9957
282 G A 0.0000
283 T A 0.0000
284 G A -1.1180
285 N A -1.6405
286 F A 0.0000
287 S A 0.7437
288 L A 1.0160
289 T A 1.4566
290 L A 1.1090
291 F A 0.4536
292 Y A 0.0211
293 E A -2.2727
294 K A -2.2934
295 A A -0.9034
296 P A 0.1000
297 V A 1.0146
298 S A 0.0575
299 G A -0.4041
300 L A 0.0000
301 E A -1.9637
302 N A -2.2006
303 A A -1.2964
304 D A -1.4477
305 A A -1.7731
306 S A -2.0798
307 D A -2.3864
308 F A -0.7841
309 S A 0.4085
310 V A 1.3744
311 L A 1.9263
312 G A 0.6219
313 E A -1.1586
314 A A -0.4466
315 A A -0.7785
316 A A -1.2121
317 G A -1.4858
318 S A -0.1624
319 V A 1.8924
320 Q A 0.0000
321 W A 1.9441
322 A A 0.0000
323 G A -0.4347
324 V A 0.0000
325 K A -2.6464
326 V A -1.6739
327 A A -1.0233
328 E A -0.7374
329 R A -0.3109
330 G A -0.3727
331 Q A -0.8764
332 G A 0.0000
333 V A 0.0000
334 K A -1.5406
335 M A -0.5209
336 V A -0.1919
337 T A 0.0000
338 T A -1.9272
339 E A -3.1772
340 E A -3.1543
341 Q A -2.3131
342 P A -2.0319
343 K A -1.7654
344 G A -1.4555
345 K A -1.3281
346 W A 0.2952
347 Q A 0.8420
348 A A 1.4625
349 L A 2.2503
350 R A 1.1878
351 I A 2.0415
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Laboratory of Theory of Biopolymers 2018