Project name: a907b1f59018c8d

Status: done

Started: 2020-06-26 12:06:06
Settings
Chain sequence(s) A: MKVLILACLVALALARELEELNVPGEIVESLSSSEESITRINKKIEKFQSEEQQQTEDELQDKIHPFAQTQSLVYPFPGPIPNSLPQNIPPLTQTPVVVPPFLQPEVMGVSKVKEAMAPKHKEMPFPKYPVEPFTESQSLTLTDVENLHLPLPLLQSWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPYPQRDMPIQAFLLYQEPVLGPVRGPFPIIV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:04)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:04)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:04)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:04)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:13)
[INFO]       Movie:    Creting movie with webm format                                              (00:12:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:58)
Show buried residues

Minimal score value
-4.0544
Maximal score value
3.3647
Average score
-0.5552
Total score value
-124.3595

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.1386
2 K A -0.9337
3 V A 0.7365
4 L A 0.0000
5 I A 0.0000
6 L A -0.4213
7 A A 0.0000
8 C A 0.0000
9 L A 0.0000
10 V A -0.1457
11 A A 0.0000
12 L A 0.0000
13 A A 0.0000
14 L A 0.0000
15 A A 0.0000
16 R A -3.2535
17 E A -3.3484
18 L A 0.0000
19 E A -3.0772
20 E A -2.0459
21 L A -0.9089
22 N A -1.4770
23 V A 0.0000
24 P A 0.0000
25 G A -1.6172
26 E A -1.3803
27 I A 0.0000
28 V A 0.0000
29 E A -2.2818
30 S A -0.5323
31 L A 0.0000
32 S A -1.3203
33 S A -0.7858
34 S A -1.9914
35 E A -3.1638
36 E A -3.1467
37 S A -2.6358
38 I A -2.5137
39 T A -2.7869
40 R A -3.6085
41 I A 0.0000
42 N A -3.1927
43 K A -4.0544
44 K A -3.5692
45 I A 0.0000
46 E A -3.7341
47 K A -3.6399
48 F A 0.0000
49 Q A -1.7319
50 S A -1.5397
51 E A -1.6844
52 E A -1.1590
53 Q A 0.0000
54 Q A -1.3290
55 Q A -2.1028
56 T A -1.7837
57 E A -2.0072
58 D A -2.3024
59 E A -3.6183
60 L A 0.0000
61 Q A -3.2115
62 D A -3.9412
63 K A -3.1600
64 I A 0.0000
65 H A -2.3284
66 P A -0.9907
67 F A -0.0857
68 A A -0.2699
69 Q A -1.0488
70 T A 0.0000
71 Q A -0.1559
72 S A 0.8197
73 L A 1.7731
74 V A 1.8944
75 Y A 1.6934
76 P A 1.3845
77 F A 2.0512
78 P A 0.7892
79 G A 0.0852
80 P A -0.3845
81 I A -0.2429
82 P A -0.3611
83 N A 0.2262
84 S A 0.0000
85 L A 0.3718
86 P A -0.3584
87 Q A 0.0000
88 N A -1.0926
89 I A 0.1868
90 P A 0.0000
91 P A -0.0030
92 L A 0.1508
93 T A -0.1314
94 Q A 0.1532
95 T A 0.9500
96 P A 0.0000
97 V A 2.3181
98 V A 2.4197
99 V A 1.9221
100 P A 1.3160
101 P A 1.2702
102 F A 2.5176
103 L A 2.1155
104 Q A 0.3866
105 P A -0.6758
106 E A -1.5565
107 V A -0.6891
108 M A -0.5323
109 G A -1.0962
110 V A -0.9068
111 S A 0.0000
112 K A -1.9469
113 V A -1.0820
114 K A -1.9016
115 E A -1.4439
116 A A -1.2790
117 M A -0.7757
118 A A -0.9432
119 P A -1.6242
120 K A -3.2298
121 H A -3.0964
122 K A -3.4523
123 E A -2.9404
124 M A -0.5372
125 P A -0.6372
126 F A 0.0702
127 P A -0.7644
128 K A -1.9137
129 Y A -1.3401
130 P A -1.3037
131 V A -1.2906
132 E A -2.0438
133 P A -1.2265
134 F A -0.9074
135 T A -1.1910
136 E A -2.0701
137 S A 0.0000
138 Q A -1.1574
139 S A -0.3792
140 L A 1.2611
141 T A 0.3695
142 L A 0.7737
143 T A 0.2565
144 D A -0.3412
145 V A -0.3354
146 E A -0.9098
147 N A -1.4395
148 L A -0.9544
149 H A -0.4681
150 L A 0.0000
151 P A 0.0000
152 L A -0.2589
153 P A -0.5208
154 L A 0.0000
155 L A 0.0000
156 Q A -0.8744
157 S A -1.0610
158 W A 0.0000
159 M A -0.7466
160 H A -1.6765
161 Q A -1.7525
162 P A -1.0111
163 H A -0.6072
164 Q A -0.5867
165 P A -0.5344
166 L A 0.1124
167 P A 0.8035
168 P A 0.9543
169 T A 1.7656
170 V A 2.6580
171 M A 2.8436
172 F A 2.6769
173 P A 1.1025
174 P A -0.2428
175 Q A -0.9824
176 S A -0.4289
177 V A -0.4358
178 L A 0.0000
179 S A 0.0888
180 L A -0.0700
181 S A -0.5289
182 Q A -1.4400
183 S A -0.8699
184 K A -1.4388
185 V A -0.1525
186 L A 0.8504
187 P A 0.2656
188 V A 0.0753
189 P A -1.3793
190 Q A -2.5158
191 K A -1.9621
192 A A 0.0000
193 V A 0.0000
194 P A -1.0670
195 Y A -1.4237
196 P A -1.9497
197 Q A -2.8294
198 R A -3.5170
199 D A -2.9714
200 M A -1.3033
201 P A 0.5340
202 I A 2.6484
203 Q A 2.0867
204 A A 0.0000
205 F A 1.2505
206 L A 1.2728
207 L A 0.0000
208 Y A 0.0000
209 Q A 0.0000
210 E A -0.8956
211 P A 0.0000
212 V A 0.0000
213 L A 0.0000
214 G A 0.0000
215 P A 0.0000
216 V A 0.0000
217 R A -0.2967
218 G A -0.3886
219 P A 0.0000
220 F A 0.0000
221 P A 1.5718
222 I A 2.6722
223 I A 3.3344
224 V A 3.3647
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Laboratory of Theory of Biopolymers 2018