Project name: partially_folded_insuliChain_A

Status: done

Started: 2023-09-27 06:42:17
Settings
Chain sequence(s) A: GIVEQCCTSICSLYQLENYCN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:08)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:00:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:08)
Show buried residues

Minimal score value
-1.7146
Maximal score value
2.0724
Average score
0.343
Total score value
7.2037

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.7852
2 I A 2.0724
3 V A 1.5510
4 E A -0.5704
5 Q A -0.4945
6 C A 0.3213
7 C A 0.3807
8 T A 0.1392
9 S A 0.2666
10 I A 1.7381
11 C A 1.3812
12 S A 1.3333
13 L A 1.7843
14 Y A 1.2792
15 Q A -0.1114
16 L A -0.2187
17 E A -1.6805
18 N A -1.7146
19 Y A 0.1763
20 C A 0.1116
21 N A -1.3266
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Laboratory of Theory of Biopolymers 2018