| Chain sequence(s) |
A: DIQMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQKKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTITSLQPEDFATYYCQQGYITTTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECQVQLVQSGAEVKKPGASVKVSCKVSGYTLTELSMHWVRQAPGKGLEWMGGFDPEDGETIYAQKFQGRVTMTEDTSTDTAYMELSSLRSEDTAVYYCATDGVTLPGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | No |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:01:28)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:01:28)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:01:28)
[INFO] runJob: Creating pdb object from: input.pdb (00:01:28)
[INFO] runJob: FoldX not utilized. Treating input pdb file as it was already optimized. (00:01:29)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:31)
[CRITICAL] pyMol: Pymol encountered an error: /bin/sh: pymol: command not found Movie
creation failed. (00:01:32)
[INFO] Main: Simulation completed successfully. (00:01:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -1.9303 | |
| 2 | I | A | 0.0000 | |
| 3 | Q | A | -2.0708 | |
| 4 | M | A | 0.0000 | |
| 5 | T | A | -1.2521 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.6421 | |
| 8 | P | A | -0.5105 | |
| 9 | S | A | -0.6998 | |
| 10 | S | A | -0.4974 | |
| 11 | L | A | -0.2037 | |
| 12 | S | A | -0.5656 | |
| 13 | A | A | 0.0000 | |
| 14 | S | A | -0.3235 | |
| 15 | V | A | 0.6350 | |
| 16 | G | A | -0.4864 | |
| 17 | D | A | -1.5206 | |
| 18 | R | A | -2.1697 | |
| 19 | V | A | 0.0000 | |
| 20 | T | A | -0.5646 | |
| 21 | I | A | 0.0000 | |
| 22 | T | A | -0.6869 | |
| 23 | C | A | 0.0000 | |
| 24 | R | A | -2.1980 | |
| 25 | A | A | 0.0000 | |
| 26 | S | A | -1.5995 | |
| 27 | Q | A | -1.2795 | |
| 28 | S | A | -0.7326 | |
| 29 | I | A | 0.0000 | |
| 30A | S | A | -0.0760 | |
| 31 | S | A | 0.2315 | |
| 32 | Y | A | 1.6294 | |
| 33 | L | A | 0.0000 | |
| 34 | N | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | Y | A | 0.0000 | |
| 37 | Q | A | -0.7529 | |
| 38 | K | A | 0.0000 | |
| 39 | K | A | -1.5946 | |
| 40 | P | A | -1.4457 | |
| 41 | G | A | -1.4503 | |
| 42 | K | A | -2.4558 | |
| 43 | A | A | -1.6206 | |
| 44 | P | A | 0.0000 | |
| 45 | K | A | -1.0589 | |
| 46 | L | A | 0.0000 | |
| 47 | L | A | 0.0000 | |
| 48 | I | A | 0.0000 | |
| 49 | Y | A | 0.5415 | |
| 50 | A | A | 0.4882 | |
| 51 | A | A | 0.0000 | |
| 52 | S | A | -0.1310 | |
| 53 | S | A | 0.1194 | |
| 54 | L | A | 0.3621 | |
| 55 | Q | A | 0.0000 | |
| 56 | S | A | -0.3550 | |
| 57 | G | A | -0.4746 | |
| 58 | V | A | -0.2483 | |
| 59 | P | A | -0.3278 | |
| 60 | S | A | -0.3580 | |
| 61 | R | A | -0.6875 | |
| 62 | F | A | 0.0000 | |
| 63 | S | A | -0.1925 | |
| 64 | G | A | -0.2261 | |
| 65 | S | A | -0.6109 | |
| 66 | G | A | -0.9970 | |
| 67 | S | A | -0.9144 | |
| 68 | G | A | -0.9305 | |
| 69 | T | A | -1.3822 | |
| 70 | D | A | -2.1216 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.6931 | |
| 73 | L | A | 0.0000 | |
| 74 | T | A | -0.5214 | |
| 75 | I | A | 0.0000 | |
| 76 | T | A | -1.2128 | |
| 77 | S | A | -0.9884 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -0.5656 | |
| 80 | P | A | -0.7617 | |
| 81 | E | A | -1.8093 | |
| 82 | D | A | 0.0000 | |
| 83 | F | A | -0.4022 | |
| 84 | A | A | 0.0000 | |
| 85 | T | A | -0.4884 | |
| 86 | Y | A | 0.0000 | |
| 87 | Y | A | 0.0000 | |
| 88 | C | A | 0.0000 | |
| 89 | Q | A | 0.0000 | |
| 90 | Q | A | 0.0000 | |
| 91 | G | A | 1.3297 | |
| 93A | Y | A | 2.2315 | |
| 94 | I | A | 2.3476 | |
| 95 | T | A | 0.8966 | |
| 96 | T | A | 0.2195 | |
| 97 | T | A | -0.5492 | |
| 98 | F | A | 0.0000 | |
| 99 | G | A | 0.0000 | |
| 100 | Q | A | -1.5207 | |
| 101 | G | A | 0.0000 | |
| 102 | T | A | 0.0000 | |
| 103 | K | A | -0.6614 | |
| 104 | L | A | 0.0000 | |
| 105 | E | A | 0.0000 | |
| 106 | I | A | -0.6112 | |
| 107 | K | A | -1.0296 | |
| 108 | R | A | -1.0547 | |
| 108! | T | A | 0.0621 | |
| 109 | V | A | 1.1643 | |
| 110 | A | A | 0.3921 | |
| 111 | A | A | 0.0267 | |
| 112 | P | A | 0.0000 | |
| 113 | S | A | -0.1631 | |
| 114 | V | A | 0.0000 | |
| 115 | F | A | 0.0119 | |
| 116 | I | A | 0.0000 | |
| 117 | F | A | 0.0000 | |
| 118 | P | A | 0.0000 | |
| 119 | P | A | 0.0000 | |
| 120 | S | A | 0.0000 | |
| 121 | D | A | -2.5587 | |
| 122 | E | A | -2.0816 | |
| 123 | Q | A | 0.0000 | |
| 124 | L | A | -1.8065 | |
| 125 | K | A | -2.5358 | |
| 126 | S | A | -1.5598 | |
| 127 | G | A | -1.3360 | |
| 128 | T | A | -0.9570 | |
| 129 | A | A | 0.0000 | |
| 130 | S | A | 0.0000 | |
| 131 | V | A | 0.0000 | |
| 132 | V | A | 0.0000 | |
| 133 | C | A | 0.0000 | |
| 134 | L | A | 0.0000 | |
| 135 | L | A | 0.0000 | |
| 136 | N | A | 0.0000 | |
| 137 | N | A | -1.0452 | |
| 138 | F | A | 0.0000 | |
| 139 | Y | A | 0.0000 | |
| 140 | P | A | -0.8807 | |
| 141 | R | A | -1.8037 | |
| 142 | E | A | -2.6270 | |
| 143 | A | A | 0.0000 | |
| 144 | K | A | -2.3695 | |
| 145 | V | A | 0.0000 | |
| 146 | Q | A | -0.8493 | |
| 147 | W | A | 0.0000 | |
| 148 | K | A | 0.0000 | |
| 149 | V | A | 0.0000 | |
| 150 | D | A | -1.9409 | |
| 151 | N | A | -1.4646 | |
| 152 | A | A | -0.1177 | |
| 153 | L | A | 0.8509 | |
| 154 | Q | A | 0.0082 | |
| 155 | S | A | -0.5208 | |
| 156 | G | A | -0.9763 | |
| 157 | N | A | -0.8759 | |
| 158 | S | A | -1.0025 | |
| 159 | Q | A | -1.0794 | |
| 160 | E | A | -1.3761 | |
| 161 | S | A | 0.0000 | |
| 162 | V | A | -0.3752 | |
| 163 | T | A | -0.9617 | |
| 164 | E | A | -1.9971 | |
| 165 | Q | A | -1.7746 | |
| 166 | D | A | -2.2600 | |
| 167 | S | A | -1.8565 | |
| 168 | K | A | -2.4055 | |
| 169 | D | A | -2.2377 | |
| 170 | S | A | 0.0000 | |
| 171 | T | A | 0.0000 | |
| 172 | Y | A | 0.0000 | |
| 173 | S | A | 0.0000 | |
| 174 | L | A | 0.0000 | |
| 175 | S | A | 0.0000 | |
| 176 | S | A | 0.0000 | |
| 177 | T | A | -0.5149 | |
| 178 | L | A | 0.0000 | |
| 179 | T | A | -0.2756 | |
| 180 | L | A | -0.0996 | |
| 181 | S | A | -0.7767 | |
| 182 | K | A | -1.7897 | |
| 183 | A | A | -1.3484 | |
| 184 | D | A | -1.7201 | |
| 185 | Y | A | -1.8312 | |
| 186 | E | A | -2.8180 | |
| 187 | K | A | -3.0627 | |
| 188 | H | A | -2.7385 | |
| 189 | K | A | -3.2907 | |
| 190 | V | A | -1.9050 | |
| 191 | Y | A | 0.0000 | |
| 192 | A | A | 0.0000 | |
| 193 | C | A | 0.0000 | |
| 194 | E | A | -0.5725 | |
| 195 | V | A | 0.0000 | |
| 196 | T | A | -1.1782 | |
| 197 | H | A | 0.0000 | |
| 198 | Q | A | -1.6446 | |
| 199 | G | A | -0.4475 | |
| 200 | L | A | -0.3674 | |
| 201 | S | A | -0.4522 | |
| 202 | S | A | -0.4277 | |
| 203 | P | A | -0.5130 | |
| 204 | V | A | -0.0358 | |
| 205 | T | A | -0.4373 | |
| 206 | K | A | -0.7105 | |
| 207 | S | A | -0.6348 | |
| 208 | F | A | 0.0000 | |
| 209 | N | A | -2.0891 | |
| 210 | R | A | -2.7614 | |
| 211 | G | A | -2.3984 | |
| 212 | E | A | -2.8780 | |
| 213 | C | A | -1.5445 | |
| 1 | Q | A | -1.1448 | |
| 2 | V | A | -0.3159 | |
| 3 | Q | A | -0.3832 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.7510 | |
| 6 | Q | A | 0.0000 | |
| 7 | S | A | -0.4354 | |
| 8 | G | A | -0.4725 | |
| 9 | A | A | 0.1717 | |
| 10 | E | A | -0.0293 | |
| 11 | V | A | 1.1006 | |
| 12 | K | A | -0.5630 | |
| 13 | K | A | -1.7423 | |
| 14 | P | A | -1.8398 | |
| 15 | G | A | -1.1922 | |
| 16 | A | A | -0.9197 | |
| 17 | S | A | -1.0028 | |
| 18 | V | A | 0.0000 | |
| 19 | K | A | -1.9945 | |
| 20 | V | A | 0.0000 | |
| 21 | S | A | -0.4765 | |
| 22 | C | A | 0.0000 | |
| 23 | K | A | -0.4836 | |
| 24 | V | A | 0.0000 | |
| 25 | S | A | -0.2189 | |
| 26 | G | A | -0.4276 | |
| 27 | Y | A | 0.0120 | |
| 28 | T | A | -0.3954 | |
| 29 | L | A | 0.0000 | |
| 30A | T | A | -1.2107 | |
| 30B | E | A | -1.7131 | |
| 31 | L | A | -0.7062 | |
| 32 | S | A | -0.8028 | |
| 33 | M | A | 0.0000 | |
| 34 | H | A | 0.1640 | |
| 35 | W | A | 0.0000 | |
| 36 | V | A | 0.0000 | |
| 37 | R | A | 0.0000 | |
| 38 | Q | A | -0.4302 | |
| 39 | A | A | 0.0000 | |
| 40 | P | A | -1.0421 | |
| 41 | G | A | -1.3183 | |
| 42 | K | A | -1.5255 | |
| 43 | G | A | -1.1342 | |
| 44 | L | A | 0.0000 | |
| 45 | E | A | -0.7542 | |
| 46 | W | A | 0.0000 | |
| 47 | M | A | 0.0000 | |
| 48 | G | A | 0.0000 | |
| 49 | G | A | 0.0000 | |
| 51A | F | A | -0.3948 | |
| 51B | D | A | -1.9173 | |
| 51C | P | A | -2.3737 | |
| 52 | E | A | -3.4001 | |
| 53 | D | A | -3.4870 | |
| 54 | G | A | -2.7192 | |
| 55 | E | A | -2.4849 | |
| 56 | T | A | -0.3784 | |
| 57 | I | A | 0.9736 | |
| 58 | Y | A | 0.2844 | |
| 59 | A | A | -1.1164 | |
| 60 | Q | A | -2.4067 | |
| 61 | K | A | -2.6495 | |
| 62 | F | A | 0.0000 | |
| 63 | Q | A | -2.2770 | |
| 64 | G | A | -1.4858 | |
| 65 | R | A | -1.2515 | |
| 66 | V | A | 0.0000 | |
| 67 | T | A | -0.4551 | |
| 68 | M | A | 0.0000 | |
| 69 | T | A | -0.3169 | |
| 70 | E | A | -0.8100 | |
| 71 | D | A | -1.0186 | |
| 72 | T | A | -0.9380 | |
| 73 | S | A | -0.5704 | |
| 74 | T | A | -0.6567 | |
| 75 | D | A | -0.7200 | |
| 76 | T | A | 0.0000 | |
| 77 | A | A | 0.0000 | |
| 78 | Y | A | -0.5586 | |
| 79 | M | A | 0.0000 | |
| 80 | E | A | -1.3017 | |
| 81 | L | A | 0.0000 | |
| 82 | S | A | -0.9131 | |
| 83 | S | A | -0.8879 | |
| 84 | L | A | 0.0000 | |
| 85 | R | A | -2.0471 | |
| 86 | S | A | -1.8382 | |
| 87 | E | A | -2.3074 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.4961 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | 0.2580 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0000 | |
| 94 | C | A | 0.0000 | |
| 95 | A | A | 0.0000 | |
| 96 | T | A | 0.0000 | |
| 97 | D | A | 0.0838 | |
| 98 | G | A | 0.6341 | |
| 99 | V | A | 1.6002 | |
| 100 | T | A | 0.9793 | |
| 101 | L | A | 1.1171 | |
| 102 | P | A | 0.0000 | |
| 102A | G | A | 0.2013 | |
| 102B | F | A | 0.0000 | |
| 103 | D | A | 0.0000 | |
| 104 | Y | A | 0.3557 | |
| 105 | W | A | 0.0000 | |
| 106 | G | A | 0.0000 | |
| 107 | Q | A | -1.2495 | |
| 108 | G | A | -0.6024 | |
| 109 | T | A | 0.0000 | |
| 110 | L | A | 0.8029 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | 0.0000 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.9914 | |
| 115 | S | A | -0.9093 | |
| 120 | A | A | -0.4729 | |
| 121 | S | A | -0.4552 | |
| 122 | T | A | -0.4581 | |
| 123 | K | A | -0.9770 | |
| 124 | G | A | -1.3141 | |
| 125 | P | A | 0.0000 | |
| 126 | S | A | -0.1984 | |
| 127 | V | A | -0.1194 | |
| 128 | F | A | -0.4136 | |
| 129 | P | A | -0.6944 | |
| 130 | L | A | 0.0000 | |
| 131 | A | A | 0.0000 | |
| 132 | P | A | 0.0000 | |
| 133 | S | A | -0.5520 | |
| 134 | S | A | -0.6964 | |
| 135 | K | A | -0.5738 | |
| 136 | S | A | -0.7257 | |
| 137 | T | A | -0.7680 | |
| 138 | S | A | -0.7389 | |
| 139 | G | A | -0.8590 | |
| 140 | G | A | -0.8472 | |
| 141 | T | A | -0.6007 | |
| 142 | A | A | 0.0000 | |
| 143 | A | A | 0.0000 | |
| 144 | L | A | 0.0000 | |
| 145 | G | A | 0.0000 | |
| 146 | C | A | 0.0000 | |
| 147 | L | A | 0.0000 | |
| 148 | V | A | 0.0000 | |
| 149 | K | A | 0.0000 | |
| 150 | D | A | -0.3343 | |
| 151 | Y | A | 0.0000 | |
| 152 | F | A | 0.0000 | |
| 153 | P | A | -0.4245 | |
| 154 | E | A | -0.8866 | |
| 155 | P | A | -1.0612 | |
| 156 | V | A | 0.0000 | |
| 157 | T | A | -0.7164 | |
| 158 | V | A | -0.3763 | |
| 159 | S | A | -0.3266 | |
| 160 | W | A | 0.0000 | |
| 161 | N | A | -0.7329 | |
| 162 | S | A | -0.6667 | |
| 163 | G | A | -0.3561 | |
| 164 | A | A | -0.1762 | |
| 165 | L | A | -0.0126 | |
| 166 | T | A | -0.1732 | |
| 167 | S | A | -0.1845 | |
| 168 | G | A | -0.2829 | |
| 169 | V | A | 0.1472 | |
| 170 | H | A | 0.0254 | |
| 171 | T | A | 0.0276 | |
| 172 | F | A | 0.0000 | |
| 173 | P | A | -0.3206 | |
| 174 | A | A | 0.0766 | |
| 175 | V | A | 0.4285 | |
| 176 | L | A | 1.0714 | |
| 177 | Q | A | 0.1322 | |
| 178 | S | A | -0.2316 | |
| 179 | S | A | -0.2367 | |
| 180 | G | A | -0.1428 | |
| 181 | L | A | -0.0348 | |
| 182 | Y | A | 0.0000 | |
| 183 | S | A | 0.0000 | |
| 184 | L | A | 0.0000 | |
| 185 | S | A | 0.0000 | |
| 186 | S | A | 0.0000 | |
| 187 | V | A | 0.0000 | |
| 188 | V | A | 0.0000 | |
| 189 | T | A | -0.1883 | |
| 190 | V | A | 0.0000 | |
| 191 | P | A | -0.5758 | |
| 192 | S | A | 0.0000 | |
| 193 | S | A | -0.8207 | |
| 194 | S | A | -0.6734 | |
| 195 | L | A | -0.7468 | |
| 196 | G | A | -0.8972 | |
| 197 | T | A | -0.8034 | |
| 198 | Q | A | -1.1713 | |
| 199 | T | A | -0.9985 | |
| 200 | Y | A | 0.0000 | |
| 201 | I | A | -0.8281 | |
| 202 | C | A | 0.0000 | |
| 203 | N | A | 0.0000 | |
| 204 | V | A | 0.0000 | |
| 205 | N | A | -1.9766 | |
| 206 | H | A | 0.0000 | |
| 207 | K | A | -2.8225 | |
| 208 | P | A | -1.5066 | |
| 209 | S | A | -1.8508 | |
| 210 | N | A | -2.4980 | |
| 211 | T | A | -2.0000 | |
| 212 | K | A | -2.5179 | |
| 213 | V | A | -1.3178 | |
| 214 | D | A | -2.3942 | |
| 215 | K | A | -1.7259 | |
| 216 | R | A | -2.2178 | |
| 217 | V | A | 0.0000 | |
| 218 | E | A | -1.2689 | |
| 219 | P | A | -0.7585 | |
| 220 | K | A | -0.8941 | |
| 221 | S | A | -1.2395 | |
| 222 | C | A | -1.6191 | |
| 223 | D | A | -2.7321 | |
| 224 | K | A | -2.7912 | |
| 225 | T | A | -1.4491 |
ALA alanine
ARG arginine
ASN asparagine
ASP aspartic acid
CYS cysteine
GLN glutamine
GLU glutamic acid
GLY glycine
HIS histidine
ILE isoleucine
LEU leucine
LYS lysine
MET methionine
PHE phenylalanine
PRO proline
SER serine
THR threonine
TRP tryptophan
TYR tyrosine
VAL valine