Project name: SIVmac239 [mutate: AR112A]

Status: done

Started: 2024-04-19 18:11:28
Settings
Chain sequence(s) A: MSDPRERIPPGNSGEETIGEAFEWLNRTVEEINREAVNHLPRELIFQVWQRSWEYWHDEQGMSPSYVKYRYLCLIQKALFMHCKKGCRCLGEGHGAGGWRPGPPPPPPPGLA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AR112A
Energy difference between WT (input) and mutated protein (by FoldX) -0.840371 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:32)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:35)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:05)
Show buried residues

Minimal score value
-3.9626
Maximal score value
0.9624
Average score
-1.231
Total score value
-137.8669

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.7745
2 S A -1.0680
3 D A -2.1532
4 P A -2.1983
5 R A -3.2615
6 E A -3.2868
7 R A -2.4806
8 I A -0.1630
9 P A -0.8174
10 P A -0.7281
11 G A -1.2292
12 N A -1.4582
13 S A -0.8245
14 G A -1.9185
15 E A -2.5324
16 E A -2.7393
17 T A -1.6703
18 I A 0.0699
19 G A -1.1341
20 E A -2.0067
21 A A -0.3969
22 F A 0.4739
23 E A -1.6960
24 W A -0.6255
25 L A 0.0000
26 N A -1.9561
27 R A -3.0052
28 T A -2.0678
29 V A -1.9953
30 E A -3.7415
31 E A -3.9626
32 I A -2.5615
33 N A -2.8788
34 R A -3.4549
35 E A -2.7539
36 A A 0.0000
37 V A -1.4445
38 N A -1.6514
39 H A -1.1371
40 L A 0.0000
41 P A -1.0875
42 R A -2.0155
43 E A -1.2681
44 L A -0.3101
45 I A 0.0000
46 F A -0.6626
47 Q A -1.6752
48 V A 0.0000
49 W A -0.8705
50 Q A -1.9053
51 R A -2.8109
52 S A 0.0000
53 W A -2.1476
54 E A -3.3033
55 Y A -2.0157
56 W A -1.6595
57 H A -2.2562
58 D A -3.5988
59 E A -3.3005
60 Q A -2.3520
61 G A -1.8733
62 M A -0.6168
63 S A -0.2906
64 P A -0.2952
65 S A 0.1982
66 Y A 0.6196
67 V A 0.0000
68 K A 0.3009
69 Y A 0.9624
70 R A 0.0650
71 Y A 0.0000
72 L A 0.0004
73 C A 0.0841
74 L A 0.3450
75 I A 0.0000
76 Q A -0.9705
77 K A -1.0244
78 A A -0.3433
79 L A 0.0000
80 F A 0.5625
81 M A -0.4015
82 H A -0.8147
83 C A -0.6929
84 K A -1.7452
85 K A -2.3333
86 G A -1.7484
87 C A -1.0623
88 R A -2.2621
89 C A -1.2331
90 L A 0.0295
91 G A -1.3506
92 E A -2.6108
93 G A -2.1457
94 H A -2.3558
95 G A -1.4674
96 A A -1.3522
97 G A -1.2766
98 G A -0.9505
99 W A -0.1188
100 R A -1.8021
101 P A -1.4215
102 G A -1.2011
103 P A -0.9629
104 P A -1.0374
105 P A -0.9806
106 P A -0.6512
107 P A -0.5413
108 P A -0.2745
109 P A -0.4944
110 G A -0.4066
111 L A 0.3086
112 R A -1.3134 mutated: AR112A
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Laboratory of Theory of Biopolymers 2018