Project name: Nivo K57Q [mutate: KQ57H] [mutate: QT57H]

Status: done

Started: 2024-04-29 17:35:42
Settings
Chain sequence(s) H: VQLVESGGGVVQPGRSLRLDCKASGITFSNSGMHWVRQAPGKGLEWVAVIWYDGSQRYYADSVKGRFTISRDNSKNTLFLQMNSLRAEDTAVYYCATNDDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQSSNWPRTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNR
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues QT57H
Energy difference between WT (input) and mutated protein (by FoldX) 0.141941 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:21)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:25)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:46)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:49)
Show buried residues

Minimal score value
-3.8074
Maximal score value
1.4407
Average score
-0.7529
Total score value
-315.463

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E L -1.6808
2 I L 0.0000
3 V L 0.5839
4 L L 0.0000
5 T L -0.7219
6 Q L 0.0000
7 S L -0.7353
8 P L -0.2971
9 A L -0.4086
10 T L -0.3900
11 L L -0.3103
12 S L -0.7453
13 L L -1.1160
14 S L -1.4947
15 P L -1.6929
16 G L -1.6961
17 E L -2.4140
18 R L -2.5679
19 A L 0.0000
20 T L -0.6535
21 L L 0.0000
22 S L -0.8837
23 C L 0.0000
24 R L -2.4051
25 A L 0.0000
26 S L -1.0799
27 Q L -1.7510
28 S L -1.2266
29 V L 0.0000
30 S L -0.5668
31 S L -0.4516
32 Y L 0.2953
33 L L 0.0000
34 A L -0.2642
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.2817
40 P L -1.2300
41 G L -1.3296
42 Q L -1.9534
43 A L -1.2008
44 P L 0.0000
45 R L -0.9641
46 L L -0.5247
47 L L 0.0000
48 I L 0.0000
49 Y L -0.9876
50 D L -1.7167
51 A L 0.0000
52 S L -1.4026
53 N L -2.0713
54 R L -1.7635
55 A L -1.2711
56 T L -0.6313
57 G L -0.6393
58 I L 0.0000
59 P L -0.4510
60 A L -0.4023
61 R L -0.8110
62 F L 0.0000
63 S L -0.6770
64 G L 0.0000
65 S L -1.0153
66 G L -1.2943
67 S L -1.0998
68 G L -1.0846
69 T L -1.8599
70 D L -2.3749
71 F L 0.0000
72 T L -0.7831
73 L L 0.0000
74 T L -0.6029
75 I L 0.0000
76 S L -1.3996
77 S L -1.6694
78 L L 0.0000
79 E L -1.8921
80 P L -2.1099
81 E L -2.2806
82 D L 0.0000
83 F L 0.0000
84 A L 0.0000
85 V L -0.4337
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 S L -0.4913
92 S L -0.4907
93 N L -1.3205
94 W L -0.5419
95 P L -0.9285
96 R L -0.6811
97 T L -0.5034
98 F L -0.1722
99 G L 0.0000
100 Q L -1.4911
101 G L 0.0000
102 T L 0.0000
103 K L -1.0337
104 V L 0.0000
105 E L -1.1268
106 I L 0.0000
107 K L -1.2969
108 R L -0.9252
109 T L -0.1007
110 V L 0.1777
111 A L -0.1593
112 A L -0.1807
113 P L 0.0000
114 S L -0.2298
115 V L 0.0000
116 F L 0.1226
117 I L 0.0594
118 F L 0.0000
119 P L -0.6984
120 P L -0.6514
121 S L -1.4325
122 D L -2.6076
123 E L -2.4934
124 Q L 0.0000
125 L L -1.8908
126 K L -2.6532
127 S L -1.5587
128 G L -1.3382
129 T L -0.9748
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L -0.4261
138 N L -0.9459
139 F L 0.0000
140 Y L 0.0000
141 P L -1.8006
142 R L -3.1620
143 E L -3.2641
144 A L -2.3677
145 K L -2.4077
146 V L -1.2719
147 Q L -0.5997
148 W L 0.0000
149 K L -0.6664
150 V L 0.0000
151 D L -1.9650
152 N L -1.4960
153 A L -0.3801
154 L L 0.6498
155 Q L -0.2279
156 S L -0.5546
157 G L -1.0203
158 N L -1.0803
159 S L -1.0625
160 Q L -0.9637
161 E L -1.4528
162 S L -0.6156
163 V L -0.7828
164 T L 0.0000
165 E L -2.1470
166 Q L 0.0000
167 D L -1.9303
168 S L -2.1979
169 K L -2.6025
170 D L -1.8816
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.5254
179 L L 0.0000
180 T L -0.3543
181 L L -0.4590
182 S L -1.0069
183 K L -2.0258
184 A L -1.7213
185 D L -2.2410
186 Y L 0.0000
187 E L -3.8074
188 K L -3.5922
189 H L -3.3559
190 K L -3.4329
191 V L -2.0034
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.9103
196 V L 0.0000
197 T L -1.1836
198 H L -1.5784
199 Q L -1.7573
200 G L -0.4441
201 L L -0.1980
202 S L -0.4292
203 S L -0.4223
204 P L -0.4412
205 V L -0.1081
206 T L -0.5068
207 K L -0.7011
208 S L -0.7196
209 F L 0.0000
210 N L -2.5455
211 R L -3.4653
2 V H 1.1384
3 Q H -0.6377
4 L H 0.0000
5 V H -0.8592
6 E H 0.0000
7 S H -1.0648
8 G H -1.0706
9 G H -0.5963
10 G H -0.4394
11 V H -0.1747
12 V H 0.0000
13 Q H -1.9010
14 P H -2.2850
15 G H -2.2923
16 R H -2.8166
17 S H -1.9375
18 L H -1.5057
19 R H -2.1515
20 L H 0.0000
21 D H -1.4910
22 C H 0.0000
23 K H -2.4939
24 A H 0.0000
25 S H -0.6263
26 G H -0.0119
27 I H 0.1083
28 T H -0.3068
29 F H 0.0000
30 S H -1.3812
31 N H -1.3502
32 S H -1.0961
33 G H -0.9998
34 M H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.9015
40 A H -1.2111
41 P H -0.9585
42 G H -1.4748
43 K H -2.4502
44 G H -1.7427
45 L H 0.0000
46 E H -1.6045
47 W H 0.0000
48 V H 0.0000
49 A H 0.0000
50 V H 0.0000
51 I H 0.0000
52 W H -0.4032
53 Y H -0.6621
54 D H -1.7912
55 G H -1.0888
56 S H -0.7993
57 T H -0.5463 mutated: QT57H
58 R H -0.5133
59 Y H -0.0391
60 Y H -0.7187
61 A H -1.2536
62 D H -2.4273
63 S H -1.6499
64 V H 0.0000
65 K H -2.5403
66 G H -1.7841
67 R H -1.6160
68 F H 0.0000
69 T H -0.8297
70 I H 0.0000
71 S H -0.6314
72 R H -1.2100
73 D H -1.8412
74 N H -2.1526
75 S H -1.6060
76 K H -2.7107
77 N H -2.3881
78 T H 0.0000
79 L H 0.0000
80 F H -0.7911
81 L H 0.0000
82 Q H -1.1913
83 M H 0.0000
84 N H -1.9464
85 S H -1.8578
86 L H 0.0000
87 R H -2.9835
88 A H -1.8736
89 E H -2.3851
90 D H 0.0000
91 T H -0.7669
92 A H 0.0000
93 V H 0.2989
94 Y H 0.0000
95 Y H 0.0000
96 C H 0.0000
97 A H 0.0000
98 T H 0.0000
99 N H -1.9984
100 D H -2.2972
101 D H -1.2947
102 Y H -0.1351
103 W H -0.3843
104 G H 0.0000
105 Q H -1.4343
106 G H 0.0000
107 T H -0.1871
108 L H 0.2666
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -0.6990
113 S H -0.7781
114 A H -0.4262
115 S H -0.6190
116 T H -1.0190
117 K H -1.5152
118 G H -1.5966
119 P H -0.8244
120 S H -0.5857
121 V H 0.0000
122 F H 0.0000
123 P H -0.8019
124 L H 0.0000
125 A H -0.2421
126 P H -0.5290
127 S H -0.9138
128 S H -1.2316
129 K H -2.0331
130 S H -1.3111
131 T H -1.0538
132 S H -0.7714
133 G H -0.8488
134 G H -0.8918
135 T H -0.5899
136 A H 0.0000
137 A H 0.0000
138 L H 0.3476
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H -0.4321
144 D H -0.6672
145 Y H 0.0000
146 F H -0.3792
147 P H 0.0000
148 E H -0.6246
149 P H -0.7737
150 V H 0.0000
151 T H -0.6225
152 V H -0.4209
153 S H -0.4417
154 W H 0.0000
155 N H -0.4666
156 S H -0.6512
157 G H -0.5911
158 A H -0.2417
159 L H 0.0199
160 T H -0.1983
161 S H -0.2147
162 G H -0.2875
163 V H 0.1524
164 H H -0.3428
165 T H -0.1548
166 F H 0.0000
167 P H -0.2773
168 A H 0.2280
169 V H 0.6919
170 L H 1.4407
171 Q H 0.3621
172 S H -0.0609
173 S H -0.2446
174 G H 0.0388
175 L H 0.0827
176 Y H 0.3352
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.1165
184 V H 0.0000
185 P H -0.5842
186 S H -0.8620
187 S H -0.7971
188 S H -0.5387
189 L H -0.6966
190 G H -0.9048
191 T H -0.6503
192 Q H -0.8937
193 T H -0.3314
194 Y H -0.1403
195 I H -0.2960
196 C H 0.0000
197 N H -1.4466
198 V H 0.0000
199 N H -1.8666
200 H H 0.0000
201 K H -2.7001
202 P H -1.5887
203 S H -1.8414
204 N H -2.5744
205 T H -2.1350
206 K H -2.6520
207 V H -1.5865
208 D H -2.3625
209 K H -1.4159
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Laboratory of Theory of Biopolymers 2018