Project name: 71bd422ff471a69 [mutate: SA5A, VR7A]

Status: done

Started: 2024-04-29 13:13:18
Settings
Chain sequence(s) A: SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues SA5A,VR7A
Energy difference between WT (input) and mutated protein (by FoldX) 3.34673 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:17)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:19)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:34)
Show buried residues

Minimal score value
-3.7755
Maximal score value
0.7347
Average score
-1.456
Total score value
-80.0825

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
5 A A -1.4095 mutated: SA5A
6 A A -1.2492
7 R A -1.5212 mutated: VR7A
8 K A -1.4598
9 A A 0.0000
10 L A -0.8434
11 F A -0.6826
12 D A -2.2491
13 Y A 0.0000
14 K A -2.5614
15 A A -2.4622
16 Q A -3.0739
17 R A -3.7755
18 E A -3.3459
19 D A -2.7205
20 E A 0.0000
21 L A 0.0000
22 T A -1.2412
23 F A 0.0000
24 T A -1.5372
25 K A -1.7824
26 S A -1.0058
27 A A 0.0000
28 I A 0.7347
29 I A 0.0000
30 Q A -1.5622
31 N A -2.5629
32 V A -2.3081
33 E A -3.0337
34 K A -3.2800
35 Q A -2.6419
36 D A -2.5722
37 G A -1.6797
38 G A -1.3364
39 W A -0.9905
40 W A -1.5971
41 R A -1.8890
42 G A 0.0000
43 D A -1.7725
44 Y A -0.7279
45 G A -0.8150
46 G A -1.3495
47 K A -1.8851
48 K A -2.6696
49 Q A -1.9781
50 L A -1.2260
51 W A -0.8782
52 F A 0.0000
53 P A 0.0000
54 S A -1.3234
55 N A -1.2389
56 Y A -0.8939
57 V A 0.0000
58 E A -2.9169
59 E A -2.7677
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Laboratory of Theory of Biopolymers 2018