Project name: PJJ-*

Status: done

Started: 2020-06-30 02:30:43
Settings
Chain sequence(s) A: NKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGL
C: NKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGL
B: NKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGL
D: NKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSDRGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHTEDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGL
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode Yes
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:04)
[INFO]       CABS:     Running CABS flex simulation                                                (00:48:38)
[INFO]       Analysis: Starting Aggrescan3D on model_10.pdb                                        (22:11:13)
[INFO]       Analysis: Starting Aggrescan3D on model_7.pdb                                         (22:12:49)
[INFO]       Analysis: Starting Aggrescan3D on model_9.pdb                                         (22:14:18)
[INFO]       Analysis: Starting Aggrescan3D on model_8.pdb                                         (22:15:51)
[INFO]       Analysis: Starting Aggrescan3D on model_11.pdb                                        (22:17:21)
[INFO]       Analysis: Starting Aggrescan3D on model_6.pdb                                         (22:18:47)
[INFO]       Analysis: Starting Aggrescan3D on model_4.pdb                                         (22:20:15)
[INFO]       Analysis: Starting Aggrescan3D on model_2.pdb                                         (22:21:40)
[INFO]       Analysis: Starting Aggrescan3D on model_5.pdb                                         (22:23:05)
[INFO]       Analysis: Starting Aggrescan3D on model_1.pdb                                         (22:24:32)
[INFO]       Analysis: Starting Aggrescan3D on model_0.pdb                                         (22:26:02)
[INFO]       Analysis: Starting Aggrescan3D on model_3.pdb                                         (22:27:29)
[INFO]       Analysis: Starting Aggrescan3D on input.pdb                                           (22:29:03)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (22:33:22)
[INFO]       Movie:    Creting movie with webm format                                              (23:24:07)
[INFO]       Main:     Simulation completed successfully.                                          (23:25:38)
Show buried residues

Minimal score value
-4.1563
Maximal score value
2.0068
Average score
-0.4947
Total score value
-933.9748

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
4 N A -1.6559
5 K A 0.0000
6 L A 0.0000
7 T A 0.0000
8 T A 0.0000
9 S A 0.0000
10 W A 0.0000
11 G A 0.0000
12 A A 0.0000
13 P A -0.4860
14 V A 0.0000
15 G A 0.0000
16 D A 0.0000
17 N A 0.0000
18 Q A 0.0000
19 N A -0.2840
20 S A 0.0000
21 M A 0.0000
22 T A 0.0000
23 A A 0.0000
24 G A 0.0000
25 S A 0.2930
26 R A 0.0000
27 G A 0.0000
28 P A 0.0000
29 T A 0.0000
30 L A 0.0000
31 I A 0.0000
32 Q A 0.0000
33 D A 0.0000
34 V A 0.0000
35 H A 0.0000
36 L A 0.0634
37 L A 0.0000
38 E A 0.0000
39 K A 0.0000
40 L A 0.0000
41 A A 0.0000
42 H A 0.0000
43 F A 0.0000
44 N A 0.0000
45 R A 0.0000
46 E A 0.0000
47 R A 0.0000
48 V A 0.0000
49 P A 0.0000
50 E A 0.1728
51 R A 0.0000
52 V A 1.8776
53 V A 0.0000
54 H A 0.0000
55 A A 0.0000
56 K A 0.0000
57 G A 0.0000
58 A A 0.0000
59 G A 0.0000
60 A A 0.0000
61 H A -0.5489
62 G A 0.0100
63 Y A -0.1080
64 F A 0.0000
65 E A -3.1505
66 V A -2.5328
67 T A -2.0436
68 N A -2.2547
69 D A -2.3351
70 V A -1.3452
71 T A -1.0257
72 K A -1.8858
73 Y A -1.7447
74 T A 0.0000
75 K A -2.1011
76 A A 0.0000
77 A A -0.7919
78 F A 0.0000
79 L A 0.0000
80 S A -1.7740
81 E A 0.0000
82 V A -1.7511
83 G A -2.0431
84 K A -3.2096
85 R A -3.1607
86 T A 0.0000
87 P A -0.8269
88 L A 0.0000
89 F A 0.0000
90 I A 0.0000
91 R A -0.2725
92 F A 0.0000
93 S A 0.0000
94 T A 0.0000
95 V A 2.0068
96 A A 0.9483
97 G A 0.0000
98 E A 0.0000
99 L A 0.0000
100 G A -0.2097
101 S A 0.0000
102 A A 0.0000
103 D A 0.0000
104 T A 0.0000
105 V A 0.0066
106 R A 0.2215
107 D A 0.0000
108 P A 0.1863
109 R A 0.0000
110 G A 0.0787
111 F A 0.0000
112 A A 0.0000
113 V A 0.0000
114 K A 0.0000
115 F A 0.0000
116 Y A 0.0000
117 T A 0.0000
118 E A -3.7665
119 E A -3.2683
120 G A 0.0000
121 N A 0.0000
122 Y A 0.0000
123 D A 0.0000
124 I A 0.0000
125 V A 0.0000
126 G A 0.0000
127 N A -0.2364
128 N A 0.0000
129 T A -0.2011
130 P A 0.0000
131 V A 0.0000
132 F A 0.3633
133 F A 0.4178
134 I A 0.0000
135 R A 0.0000
136 D A 0.0000
137 A A 0.0000
138 I A 0.0000
139 K A 0.0000
140 F A 0.4421
141 P A 0.3229
142 D A 0.0000
143 F A 0.0000
144 I A 0.3688
145 H A 0.0000
146 T A 0.0000
147 Q A -0.6057
148 K A -0.5573
149 R A -1.0483
150 D A 0.0000
151 P A 0.0000
152 K A 0.0000
153 T A 0.0000
154 H A -0.8982
155 L A -0.7238
156 K A -1.3094
157 N A -1.0533
158 P A 0.0000
159 T A -1.1663
160 A A 0.0000
161 V A 0.0000
162 W A 0.0000
163 D A -0.6954
164 F A 0.0000
165 W A 0.0000
166 S A -0.4931
167 L A -0.0102
168 S A 0.0000
169 P A 0.0000
170 E A 0.0000
171 S A 0.0000
172 L A 0.0000
173 H A 0.0000
174 Q A 0.0000
175 V A 0.0000
176 T A 0.0000
177 I A 0.0000
178 L A 0.1092
179 M A 0.0000
180 S A 0.0000
181 D A 0.0000
182 R A -0.5785
183 G A 0.0000
184 I A -0.0265
185 P A 0.0000
186 A A 0.0000
187 T A 0.0000
188 L A 0.0000
189 R A -1.7785
190 H A 0.0000
191 M A 0.0000
192 H A -0.5952
193 G A 0.0000
194 F A 0.0000
195 G A 0.0000
196 S A 0.0000
197 H A 0.0000
198 T A 0.0000
199 F A 0.0000
200 K A 0.0000
201 W A 0.0000
202 T A -0.5580
203 N A -1.2882
204 A A -1.1985
205 E A -2.4257
206 G A -2.1143
207 E A -1.6533
208 G A -1.0105
209 V A 0.0000
210 W A 0.0000
211 I A 0.0000
212 K A 0.0000
213 Y A 0.0000
214 H A -0.2445
215 F A 0.0000
216 K A -1.6187
217 T A 0.0000
218 E A -2.7276
219 Q A -2.1596
220 G A -1.0948
221 V A -0.1634
222 K A -1.6083
223 N A -0.7165
224 L A 0.0000
225 D A -0.7819
226 V A -0.3751
227 N A -0.9854
228 T A -0.6926
229 A A 0.0000
230 A A -1.3936
231 K A -2.3995
232 I A -1.0180
233 A A 0.0000
234 G A -2.1730
235 E A -2.5177
236 N A -1.1599
237 P A -0.7113
238 D A 0.0000
239 Y A 0.0320
240 H A 0.0000
241 T A 0.0000
242 E A -1.5219
243 D A -1.3284
244 L A 0.0000
245 F A 0.0000
246 N A -3.2983
247 A A -2.6426
248 I A 0.0000
249 E A -3.9170
250 N A -3.2896
251 G A -2.5045
252 D A -2.1546
253 Y A 0.0180
254 P A 0.0000
255 A A 0.0000
256 W A -1.1231
257 K A -2.0064
258 L A 0.0000
259 Y A -0.3403
260 V A 0.0000
261 Q A 0.0000
262 I A 0.0000
263 M A 0.0000
264 P A -1.1651
265 L A -0.9241
266 E A -2.2818
267 D A -1.6912
268 A A 0.0000
269 N A -1.5790
270 T A -0.9906
271 Y A -0.1739
272 R A 0.1306
273 F A 1.3580
274 D A 0.3532
275 P A 0.0000
276 F A 0.0000
277 D A 0.0000
278 V A 0.0000
279 T A -1.0052
280 K A -0.7841
281 V A 0.0000
282 W A 0.0000
283 S A -1.0667
284 Q A -1.3850
285 K A -1.8255
286 D A -1.8624
287 Y A -0.4838
288 P A 0.0701
289 L A 0.9497
290 I A 0.0000
291 E A -1.4026
292 V A 0.0000
293 G A -2.1877
294 R A -2.6264
295 M A 0.0000
296 V A 0.0000
297 L A 0.0000
298 D A -1.4432
299 R A -2.7176
300 N A -2.0854
301 P A -2.0504
302 E A -1.7136
303 N A -0.8538
304 Y A 0.0000
305 F A 0.0000
306 A A 0.0000
307 E A -0.8555
308 V A 0.0000
309 E A 0.0000
310 Q A 0.0000
311 A A 0.0000
312 T A 0.0000
313 F A 0.0000
314 S A 0.0000
315 P A 0.0000
316 G A 0.0000
317 T A 0.0000
318 L A 0.0000
319 V A 0.0000
320 P A 0.0000
321 G A 0.0000
322 I A 0.0000
323 D A 0.0000
324 V A 0.0000
325 S A 0.0000
326 P A 0.0000
327 D A 0.0000
328 K A 0.0000
329 M A 0.0000
330 L A 0.0000
331 Q A 0.0000
332 G A 0.0000
333 R A 0.0000
334 L A 0.0000
335 F A 0.0000
336 A A 0.3568
337 Y A 0.5295
338 H A 0.0000
339 D A 0.0000
340 A A 0.0000
341 H A 0.0000
342 R A 0.0000
343 Y A 0.5805
344 R A 0.2935
345 V A 0.2367
346 G A 0.0000
347 A A 0.0000
348 N A 0.0000
349 H A 0.0000
350 Q A 0.0000
351 A A 0.0000
352 L A 0.1894
353 P A -0.3986
354 I A -0.6422
355 N A 0.0000
356 R A -2.6887
357 A A -2.8293
358 R A -4.0450
359 N A -2.9787
360 K A -1.1854
361 V A 0.2638
362 N A 0.2062
363 N A 0.0450
364 Y A 0.0000
365 Q A 0.0000
366 R A 0.0000
367 D A 0.0000
368 G A 0.0000
369 Q A -0.2316
370 M A -0.1655
371 R A -0.3911
372 F A 0.0000
373 D A -0.2373
374 D A 0.0000
375 N A -0.4545
376 G A -0.5671
377 G A -0.5267
378 G A -0.4783
379 S A -0.6362
380 V A -0.6440
381 Y A 0.0000
382 Y A 0.7519
383 E A 0.0000
384 P A 0.4015
385 N A 0.2364
386 S A 0.1527
387 F A 0.7570
388 G A 0.0000
389 G A -0.5593
390 P A 0.0000
391 K A 0.0000
392 E A -2.7121
393 S A 0.0000
394 P A -1.3290
395 E A -1.3086
396 D A -1.3990
397 K A 0.0000
398 Q A -0.3319
399 A A 0.2689
400 A A 0.0000
401 Y A 1.4243
402 P A 0.0000
403 V A 1.8224
404 Q A 0.4667
405 G A 0.1644
406 I A 1.0527
407 A A 0.0000
408 D A -0.0709
409 S A 0.4250
410 V A 0.9508
411 S A 1.0373
412 Y A 1.0402
413 D A 0.1585
414 H A -0.9321
415 Y A 0.0000
416 D A -2.5614
417 H A -1.9847
418 Y A -1.3802
419 T A -1.3091
420 Q A 0.0000
421 A A 0.0000
422 G A 0.0000
423 D A -1.0982
424 L A 0.0000
425 Y A 0.0000
426 R A -2.1009
427 L A -0.0262
428 M A 0.0000
429 S A -2.0219
430 E A -3.3179
431 D A -3.2485
432 E A -2.5647
433 R A -2.8148
434 T A -2.3323
435 R A -2.2122
436 L A 0.0000
437 V A -1.4811
438 E A -1.6845
439 N A -1.0665
440 I A 0.0000
441 V A -1.1499
442 N A -1.2097
443 A A -1.1162
444 M A 0.0000
445 K A -2.5753
446 P A -1.9555
447 V A 0.0000
448 E A -3.7656
449 K A -4.1563
450 E A -3.7613
451 E A -3.0325
452 I A 0.0000
453 K A -2.3685
454 L A -0.8264
455 R A -1.5669
456 Q A 0.0000
457 I A -0.4956
458 E A -1.1284
459 H A -1.0528
460 F A 0.0000
461 Y A -0.9228
462 K A -2.1369
463 A A 0.0000
464 D A -1.8734
465 P A -2.0217
466 E A -3.1758
467 Y A 0.0000
468 G A 0.0000
469 K A -3.2432
470 R A -3.0027
471 V A 0.0000
472 A A -1.4462
473 E A -2.5069
474 G A -1.7847
475 L A -1.0067
4 N B -2.2994
5 K B -2.6206
6 L B -1.0695
7 T B 0.0000
8 T B 0.0000
9 S B 0.0000
10 W B 0.0000
11 G B -1.1452
12 A B 0.0000
13 P B -0.8608
14 V B 0.0000
15 G B 0.0000
16 D B 0.0000
17 N B 0.0000
18 Q B 0.0000
19 N B -0.3058
20 S B 0.0885
21 M B 0.0000
22 T B 0.0000
23 A B 0.0000
24 G B 0.0000
25 S B -0.2720
26 R B 0.0000
27 G B 0.0000
28 P B 0.0000
29 T B 0.0000
30 L B 0.0000
31 I B 0.0000
32 Q B 0.0000
33 D B 0.0000
34 V B 0.0000
35 H B 0.0000
36 L B 0.0000
37 L B 0.0000
38 E B 0.0000
39 K B 0.0000
40 L B 0.0000
41 A B 0.0000
42 H B 0.0000
43 F B 0.0000
44 N B 0.0000
45 R B 0.0000
46 E B 0.0000
47 R B 0.0000
48 V B 0.0691
49 P B 0.0000
50 E B -0.1227
51 R B 0.0000
52 V B 0.1611
53 V B 0.0000
54 H B 0.0000
55 A B 0.0000
56 K B 0.0000
57 G B 0.0000
58 A B 0.0000
59 G B 0.0000
60 A B 0.0000
61 H B -1.2228
62 G B -0.8628
63 Y B -0.6185
64 F B 0.0000
65 E B -1.6161
66 V B 0.0000
67 T B -1.6039
68 N B -1.3670
69 D B -1.4711
70 V B 0.4710
71 T B 0.3179
72 K B 0.1561
73 Y B -0.1701
74 T B -1.1629
75 K B -1.8376
76 A B -0.9474
77 A B -0.2147
78 F B 0.0000
79 L B 0.0000
80 S B 0.0000
81 E B -0.0443
82 V B 0.4381
83 G B -0.9243
84 K B -1.7797
85 R B -2.4867
86 T B 0.0000
87 P B -0.7055
88 L B 0.0000
89 F B 0.0000
90 I B 0.0000
91 R B 0.0000
92 F B 0.0000
93 S B 0.0000
94 T B 0.0000
95 V B 0.0000
96 A B -0.3056
97 G B -0.3012
98 E B 0.0000
99 L B 0.0000
100 G B 0.0000
101 S B 0.0000
102 A B 0.0000
103 D B 0.0000
104 T B 0.0000
105 V B 0.0000
106 R B -0.6315
107 D B 0.0000
108 P B 0.0446
109 R B 0.0000
110 G B 0.0000
111 F B 0.0000
112 A B 0.0000
113 V B 0.0000
114 K B 0.0000
115 F B 0.0000
116 Y B -1.1879
117 T B -2.0676
118 E B -3.1722
119 E B -3.1645
120 G B -1.8713
121 N B 0.0000
122 Y B -0.2597
123 D B 0.0092
124 I B 0.1675
125 V B 0.0000
126 G B 0.0000
127 N B 0.0000
128 N B 0.0000
129 T B 0.0000
130 P B 0.0000
131 V B 0.2776
132 F B 0.0000
133 F B 0.0000
134 I B 0.0000
135 R B 0.0000
136 D B 0.0000
137 A B 0.0985
138 I B 0.0000
139 K B 0.0000
140 F B 0.2257
141 P B 0.0000
142 D B 0.0000
143 F B 0.0000
144 I B 0.0000
145 H B 0.0000
146 T B 0.0000
147 Q B -0.3941
148 K B 0.0000
149 R B 0.0000
150 D B -0.5876
151 P B 0.0000
152 K B -2.0995
153 T B -1.4815
154 H B 0.0000
155 L B -0.4780
156 K B -0.8159
157 N B -0.6067
158 P B -0.6020
159 T B -0.5989
160 A B -0.1768
161 V B 0.0000
162 W B 0.0000
163 D B -0.9506
164 F B 0.0000
165 W B -0.0348
166 S B 0.0000
167 L B 0.0228
168 S B -0.1430
169 P B -0.4243
170 E B 0.0000
171 S B 0.0000
172 L B 0.0000
173 H B 0.0000
174 Q B 0.0000
175 V B 0.0000
176 T B 0.0000
177 I B 0.4361
178 L B 0.2893
179 M B 0.0000
180 S B 0.0000
181 D B -0.5359
182 R B -0.5245
183 G B 0.0000
184 I B -0.1376
185 P B 0.0000
186 A B -0.2624
187 T B 0.0000
188 L B 0.0000
189 R B -1.5796
190 H B 0.0000
191 M B 0.0000
192 H B -1.2411
193 G B 0.0000
194 F B 0.1383
195 G B 0.0000
196 S B 0.0000
197 H B 0.0000
198 T B 0.0000
199 F B 0.2446
200 K B 0.0000
201 W B 0.0000
202 T B -1.4109
203 N B -2.0168
204 A B -1.6074
205 E B -2.3973
206 G B -1.9342
207 E B -1.7758
208 G B 0.0000
209 V B 0.0000
210 W B 0.0000
211 I B 0.0000
212 K B 0.0000
213 Y B 0.0000
214 H B -0.6541
215 F B 0.0000
216 K B -2.3015
217 T B -2.2618
218 E B -2.8413
219 Q B -2.0467
220 G B -1.0154
221 V B 0.2771
222 K B -1.0662
223 N B -0.5519
224 L B 0.0000
225 D B -1.2426
226 V B -0.5624
227 N B -1.3608
228 T B -1.2874
229 A B 0.0000
230 A B -2.0779
231 K B -3.0540
232 I B 0.0000
233 A B 0.0000
234 G B -2.5572
235 E B -2.4669
236 N B -1.2762
237 P B 0.0000
238 D B 0.0000
239 Y B 0.6677
240 H B 0.0000
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221 V D -0.9703
222 K D -1.9994
223 N D -1.3841
224 L D 0.0000
225 D D -0.9416
226 V D 0.2155
227 N D -1.3056
228 T D -0.9818
229 A D -0.8209
230 A D -1.6795
231 K D -2.4925
232 I D 0.0000
233 A D 0.0000
234 G D -1.7743
235 E D -1.2954
236 N D 0.0000
237 P D -0.6788
238 D D 0.0000
239 Y D 0.1472
240 H D 0.0000
241 T D 0.0479
242 E D -0.5049
243 D D 0.0000
244 L D 0.0000
245 F D -0.4514
246 N D -1.2524
247 A D 0.0000
248 I D 0.0000
249 E D -2.9532
250 N D -2.3956
251 G D -2.0401
252 D D -1.6307
253 Y D -0.4786
254 P D 0.0000
255 A D -1.0570
256 W D 0.0000
257 K D -2.1591
258 L D 0.0000
259 Y D -0.4145
260 V D 0.0000
261 Q D -0.3204
262 I D 0.5849
263 M D 0.0000
264 P D -0.7353
265 L D -0.9089
266 E D -2.2450
267 D D -1.9324
268 A D 0.0000
269 N D -1.4289
270 T D -0.8896
271 Y D -0.1467
272 R D 0.0398
273 F D 0.8309
274 D D -0.1238
275 P D 0.0000
276 F D 0.0000
277 D D -0.2901
278 V D 0.0000
279 T D 0.0000
280 K D 0.0000
281 V D 0.2299
282 W D 0.0000
283 S D -1.2517
284 Q D -1.9748
285 K D -2.9198
286 D D -2.4880
287 Y D -1.1028
288 P D 0.0966
289 L D 0.9824
290 I D 0.5627
291 E D -1.4387
292 V D 0.0000
293 G D -1.7987
294 R D -2.4174
295 M D 0.0000
296 V D 0.0000
297 L D 0.0000
298 D D -2.1077
299 R D -2.7376
300 N D -2.8122
301 P D -1.8994
302 E D -1.9905
303 N D 0.0000
304 Y D 0.0000
305 F D 0.0000
306 A D 0.0000
307 E D -1.0481
308 V D 0.0000
309 E D 0.0000
310 Q D 0.0000
311 A D -0.2066
312 T D 0.0000
313 F D 0.0000
314 S D 0.0000
315 P D 0.0000
316 G D -0.0349
317 T D 0.0000
318 L D 0.0000
319 V D -0.1720
320 P D -0.7807
321 G D 0.0000
322 I D 0.0000
323 D D 0.0000
324 V D 0.1892
325 S D 0.0000
326 P D 0.0000
327 D D 0.0000
328 K D 0.0000
329 M D 0.0000
330 L D 0.0000
331 Q D 0.0000
332 G D -0.1297
333 R D -0.2279
334 L D 0.0000
335 F D 0.0000
336 A D 0.0000
337 Y D 0.0000
338 H D 0.0000
339 D D 0.0000
340 A D 0.0000
341 H D 0.0000
342 R D 0.0000
343 Y D 0.2992
344 R D 0.0000
345 V D 0.3446
346 G D 0.1897
347 A D 0.0000
348 N D 0.0000
349 H D 0.0000
350 Q D 0.0000
351 A D -0.2188
352 L D 0.0791
353 P D -0.3420
354 I D 0.0000
355 N D 0.0000
356 R D -1.0341
357 A D 0.0000
358 R D -2.2957
359 N D 0.0000
360 K D -1.5043
361 V D 0.4179
362 N D 0.0000
363 N D 0.0131
364 Y D 0.0000
365 Q D 0.0000
366 R D 0.0000
367 D D 0.0000
368 G D 0.0000
369 Q D 0.2021
370 M D 0.4911
371 R D 0.0000
372 F D 0.3052
373 D D -0.9604
374 D D -1.0175
375 N D 0.0000
376 G D 0.0000
377 G D 0.0000
378 G D 0.0000
379 S D 0.0000
380 V D 0.0175
381 Y D 0.8578
382 Y D 0.0000
383 E D 0.0000
384 P D -0.0962
385 N D 0.0000
386 S D 0.2935
387 F D 0.5331
388 G D 0.0276
389 G D -0.6966
390 P D -1.2770
391 K D -2.4137
392 E D -2.9136
393 S D -1.9316
394 P D -1.5892
395 E D -1.6796
396 D D -2.0576
397 K D -1.2281
398 Q D 0.0000
399 A D -0.2181
400 A D -0.1236
401 Y D 0.0000
402 P D -0.2250
403 V D 0.0000
404 Q D -0.8538
405 G D 0.0011
406 I D 1.3338
407 A D 0.0000
408 D D 0.0724
409 S D -0.0357
410 V D 0.1343
411 S D 0.1645
412 Y D 0.3552
413 D D -0.4499
414 H D -1.3172
415 Y D 0.0000
416 D D -2.5761
417 H D -1.7945
418 Y D -1.3963
419 T D -1.1973
420 Q D -1.2999
421 A D 0.0000
422 G D 0.0000
423 D D -1.9797
424 L D -0.7710
425 Y D 0.0000
426 R D -2.3254
427 L D -0.1392
428 M D -1.1611
429 S D -1.8638
430 E D -3.2765
431 D D -3.2913
432 E D -2.8142
433 R D -2.8899
434 T D -2.5121
435 R D -2.2495
436 L D 0.0000
437 V D 0.0000
438 E D -2.5733
439 N D -1.4414
440 I D 0.0000
441 V D -1.2933
442 N D -1.9101
443 A D -1.1760
444 M D 0.0000
445 K D -1.2744
446 P D -0.6667
447 V D -0.1579
448 E D 0.0000
449 K D -2.9645
450 E D -3.2433
451 E D -2.9936
452 I D 0.0000
453 K D 0.0000
454 L D -0.5190
455 R D -1.3344
456 Q D 0.0000
457 I D 0.1147
458 E D -0.6947
459 H D -0.4032
460 F D 0.0000
461 Y D -0.5853
462 K D -1.2877
463 A D -0.9281
464 D D -1.6569
465 P D -1.5123
466 E D -2.6721
467 Y D 0.0000
468 G D 0.0000
469 K D -2.8028
470 R D -2.7016
471 V D 0.0000
472 A D -1.1337
473 E D -2.4177
474 G D -1.4269
475 L D -0.0180
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CABS-flex predictions of flexibility of input structure

In dynamic mode, A3D analysis is performed on the set of models reflecting fluctuations of the input structure (predicted by CABS-flex method, models are numbered from 0 to 11) and the input model. Their A3D scores are provided below in the table.
The right panel presents comparison of the most aggregation prone model (with the highest A3D score, -0.4947 in this case) with the input model (the most aggregation prone model in blue, input in red) and RMSF plot which shows the extent of residue fluctuations in Angstroms (predicted by CABS-flex).

Model
Average A3D Score
model_10 -0.4947 View CSV PDB
model_5 -0.5048 View CSV PDB
model_1 -0.5155 View CSV PDB
model_6 -0.5169 View CSV PDB
model_3 -0.5187 View CSV PDB
model_2 -0.534 View CSV PDB
model_7 -0.5391 View CSV PDB
model_0 -0.546 View CSV PDB
model_9 -0.5504 View CSV PDB
model_8 -0.5548 View CSV PDB
model_4 -0.5588 View CSV PDB
model_11 -0.5695 View CSV PDB
input -0.6087 View CSV PDB
 

Laboratory of Theory of Biopolymers 2018