Project name: MN21

Status: done

Started: 2024-04-24 10:44:00
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Chain sequence(s) X: KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
input PDB
Selected Chain(s) X
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with X chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:01)
Show buried residues

Minimal score value
-3.4047
Maximal score value
0.4861
Average score
-1.1614
Total score value
-149.8224

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K X -1.5599
2 V X 0.0583
3 F X 0.0000
4 G X -1.1739
5 R X -1.4413
6 C X -1.2601
7 E X -1.5676
8 L X 0.0000
9 A X 0.0000
10 A X -1.2314
11 A X -1.4353
12 M X 0.0000
13 K X -2.2429
14 R X -2.4460
15 H X -1.8794
16 G X -1.9754
17 L X 0.0000
18 D X -2.3721
19 N X -2.3794
20 Y X -1.7625
21 R X -2.4454
22 G X -1.8495
23 Y X -1.3343
24 S X -1.4419
25 L X 0.0000
26 G X 0.0000
27 N X -1.0501
28 W X 0.0000
29 V X 0.0000
30 C X 0.0000
31 A X 0.0000
32 A X 0.0000
33 K X -0.6435
34 F X 0.2334
35 E X -0.2941
36 S X -0.7133
37 N X -1.0972
38 F X 0.0000
39 N X -0.9940
40 T X 0.0000
41 Q X -1.3559
42 A X -1.1418
43 T X -1.4599
44 N X -2.4288
45 R X -3.0611
46 N X -2.3631
47 T X -1.5633
48 D X -2.3784
49 G X -2.0227
50 S X 0.0000
51 T X 0.0000
52 D X -1.5807
53 Y X -0.9026
54 G X 0.0000
55 I X 0.0000
56 L X 0.0000
57 Q X 0.0000
58 I X 0.0000
59 N X -1.0373
60 S X 0.0000
61 R X -1.7513
62 W X -0.5668
63 W X 0.0000
64 C X 0.0000
65 N X -2.8127
66 D X -2.1377
67 G X -2.0103
68 R X -2.5833
69 T X -2.0922
70 P X -1.5545
71 G X -1.2105
72 S X -1.9505
73 R X -2.5931
74 N X -2.4868
75 L X -1.1009
76 C X -1.3608
77 N X -1.7622
78 I X -0.8544
79 P X -1.2198
80 C X 0.0000
81 S X -0.5225
82 A X -0.3875
83 L X 0.0000
84 L X -0.8946
85 S X -1.3284
86 S X -1.6467
87 D X -2.1411
88 I X 0.0000
89 T X -1.2004
90 A X -0.8563
91 S X 0.0000
92 V X 0.0000
93 N X -1.7624
94 C X 0.0000
95 A X 0.0000
96 K X -2.0031
97 K X -2.3028
98 I X 0.0000
99 V X 0.0000
100 S X -2.3171
101 D X -2.8515
102 G X -2.2014
103 N X -2.1628
104 G X -1.8050
105 M X 0.0000
106 N X -1.3554
107 A X -0.6865
108 W X 0.0000
109 V X 0.4861
110 A X -0.7736
111 W X 0.0000
112 R X -3.0663
113 N X -3.0486
114 R X -2.9012
115 C X 0.0000
116 K X -3.4047
117 G X -2.2341
118 T X -2.1440
119 D X -2.3951
120 V X -1.7765
121 Q X -2.0869
122 A X -1.5858
123 W X -1.0833
124 I X -1.2115
125 R X -2.2555
126 G X -1.5086
127 C X -1.2830
128 R X -1.4689
129 L X -0.0132
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Laboratory of Theory of Biopolymers 2018