Project name: c95f008dbb2664e

Status: done

Started: 2024-04-29 15:36:45
Settings
Chain sequence(s) H: EVQLQQSGAEVVRSGASVKLSCTASGFNIKDYYIHWVKQRPEKGLEWIGWIDPEIGDTEYVPKFQGKATMTADTSSNTAYLQLSSLTSEDTAVYYCNAGHDYDRGRFPYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD
L: DIVMTQSQKFMSTSVGDRVSITCKASQNVGTAVAWYQQKPGQSPKLMIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSATDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:41)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:44)
Show buried residues

Minimal score value
-3.5846
Maximal score value
1.016
Average score
-0.7724
Total score value
-335.9724

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D L -1.2430
2 I L -0.1872
3 V L 1.0160
4 M L 0.0000
5 T L -0.3049
6 Q L 0.0000
7 S L -1.2817
8 Q L -1.9410
9 K L -2.1556
10 F L -0.7306
11 M L -0.4327
12 S L -0.4381
13 T L 0.0000
14 S L -0.6251
15 V L 0.0786
16 G L -1.1478
17 D L -1.9979
18 R L -2.6986
19 V L 0.0000
20 S L -0.6894
21 I L 0.0000
22 T L -0.9529
23 C L 0.0000
24 K L -1.7397
25 A L 0.0000
26 S L -1.0498
27 Q L -2.0986
28 N L -2.3273
29 V L 0.0000
30 G L -1.1074
31 T L -0.8382
32 A L 0.0000
33 V L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L -1.4775
39 K L -1.8714
40 P L -1.3608
41 G L -1.3457
42 Q L -2.1018
43 S L -1.6287
44 P L 0.0000
45 K L -1.3565
46 L L 0.0000
47 M L 0.0000
48 I L 0.0000
49 Y L -0.3990
50 S L -0.5897
51 A L 0.0000
52 S L -0.9931
53 N L -1.4258
54 R L -1.5508
55 Y L -0.8182
56 T L -0.4888
57 G L -0.8186
58 V L 0.0000
59 P L -1.2955
60 D L -2.1756
61 R L -1.9217
62 F L 0.0000
63 T L -0.9356
64 G L 0.0000
65 S L -0.8899
66 G L -1.2163
67 S L -1.3630
68 G L -1.6933
69 T L -2.1409
70 D L -2.6709
71 F L 0.0000
72 T L -0.7764
73 L L 0.0000
74 T L 0.0000
75 I L 0.0000
76 S L -2.0171
77 N L -2.2014
78 M L 0.0000
79 Q L -1.3193
80 S L -0.7987
81 E L -1.8459
82 D L 0.0000
83 L L -0.4457
84 A L 0.0000
85 D L -1.2159
86 Y L 0.0000
87 F L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 Y L 0.0000
92 S L -0.6550
93 S L -0.3066
94 Y L 0.2520
95 P L -0.0240
96 L L 0.0000
97 T L -0.0176
98 F L 0.0000
99 G L 0.0000
100 A L -1.2488
101 G L -1.1319
102 T L 0.0000
103 K L -1.0609
104 L L 0.0000
105 E L 0.0000
106 L L -0.4953
107 K L -1.8234
108 R L -1.8437
109 A L -1.2852
110 D L -2.0568
111 A L -1.0976
112 A L -0.6059
113 P L 0.0000
114 T L -0.0438
115 V L 0.2006
116 S L 0.1244
117 I L 0.0914
118 F L 0.0000
119 P L 0.0000
120 P L 0.0000
121 S L 0.0000
122 S L -1.6659
123 E L -2.1708
124 Q L 0.0000
125 L L -1.1669
126 T L -0.8958
127 S L -0.8633
128 G L -1.1240
129 G L -1.0363
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 F L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.7726
139 F L 0.0000
140 Y L 0.0000
141 P L -1.8373
142 K L -2.0193
143 D L -2.4243
144 I L -1.5433
145 N L -1.7823
146 V L -0.7171
147 K L -1.5017
148 W L 0.0000
149 K L -2.2196
150 I L 0.0000
151 D L -2.2165
152 G L -1.8263
153 S L -2.1389
154 E L -3.1272
155 R L -2.6342
156 Q L -2.5804
157 N L -2.0853
158 G L -0.8815
159 V L -0.6128
160 L L -0.1868
161 N L -0.9270
162 S L -0.4433
163 A L -0.7550
164 T L -1.0751
165 D L -2.0840
166 Q L -1.7616
167 D L -2.0299
168 S L -1.7900
169 K L -2.4308
170 D L -2.0877
171 S L -1.9238
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 M L -0.4342
176 S L 0.0000
177 S L 0.0000
178 T L -0.0831
179 L L 0.0000
180 T L -0.2748
181 L L 0.0000
182 T L -1.3943
183 K L -2.3445
184 D L -3.3300
185 E L -2.6529
186 Y L 0.0000
187 E L -3.5846
188 R L -3.5347
189 H L -2.9414
190 N L -2.8096
191 S L -1.6745
192 Y L 0.0000
193 T L -0.9638
194 C L 0.0000
195 E L -0.3081
196 A L 0.0000
197 T L -0.9146
198 H L 0.0000
199 K L -2.4166
200 T L -1.1822
201 S L -0.7236
202 T L -0.5782
203 S L -0.3066
204 P L -0.3376
205 I L 0.5624
206 V L 0.6830
207 K L -0.1498
208 S L -0.4563
209 F L -1.0231
210 N L -2.1399
211 R L -2.5186
212 N L -2.7942
213 E L -2.7071
214 C L -2.0576
1 E H -1.9144
2 V H -0.9324
3 Q H -1.3007
4 L H 0.0000
5 Q H -1.3838
6 Q H 0.0000
7 S H -0.7703
8 G H -0.7039
9 A H 0.1127
10 E H -0.3670
11 V H 0.7878
12 V H -0.2793
13 R H -1.9461
14 S H -1.2632
15 G H -1.0873
16 A H -0.8867
17 S H -1.0499
18 V H 0.0000
19 K H -1.9186
20 L H 0.0000
21 S H -0.5725
22 C H 0.0000
23 T H -0.7103
24 A H 0.0000
25 S H -0.9900
26 G H -1.0417
27 F H -0.8092
28 N H -1.1273
29 I H 0.0000
30 K H -2.5783
31 D H -2.7772
32 Y H -1.6413
33 Y H -0.9979
34 I H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 K H 0.0000
39 Q H -1.4945
40 R H -2.3080
41 P H -1.9920
42 E H -2.9857
43 K H -3.1574
44 G H -1.8229
45 L H -1.2505
46 E H -1.3858
47 W H 0.0000
48 I H 0.0000
49 G H 0.0000
50 W H -0.3095
51 I H 0.0000
52 D H -1.5767
52A P H 0.0000
53 E H -2.2270
54 I H 0.0467
55 G H -1.0606
56 D H -1.8982
57 T H -1.1147
58 E H -1.2732
59 Y H -0.7714
60 V H -0.7344
61 P H -1.4865
62 K H -2.1616
63 F H 0.0000
64 Q H -2.0710
65 G H -1.5052
66 K H -1.3204
67 A H 0.0000
68 T H -0.7623
69 M H 0.0000
70 T H -0.5347
71 A H -0.9363
72 D H -1.3592
73 T H -1.5355
74 S H -0.8579
75 S H -0.7574
76 N H -0.9063
77 T H 0.0000
78 A H 0.0000
79 Y H -0.2652
80 L H 0.0000
81 Q H -1.1535
82 L H 0.0000
82A S H -0.8570
82B S H -0.8269
82C L H 0.0000
83 T H -1.1986
84 S H -1.5810
85 E H -2.0535
86 D H 0.0000
87 T H -0.5602
88 A H 0.0000
89 V H 0.3140
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 N H 0.0000
94 A H 0.0000
95 G H 0.0000
96 H H -1.2861
97 D H -1.6777
98 Y H -0.0974
99 D H -1.0976
100 R H -1.9602
100A G H 0.0000
100B R H -0.8060
100C F H 0.0000
101 P H 0.0000
102 Y H -0.2213
103 W H 0.0000
104 G H 0.0000
105 Q H -1.4515
106 G H -0.5914
107 T H 0.0000
108 L H 0.7326
109 V H 0.0000
110 T H -0.0006
111 V H 0.0000
112 S H -1.2303
113 A H -1.3762
114 A H -1.5868
115 K H -2.1758
116 T H -1.0427
117 T H -0.6037
118 P H -0.6961
119 P H 0.0000
120 S H -0.4221
121 V H 0.0000
122 Y H 0.0000
123 P H -0.9836
124 L H 0.0000
125 A H 0.0000
126 P H -0.6684
127 G H -1.5647
128 S H -1.3564
129 A H -0.8656
130 A H -0.7698
131 Q H -1.5221
132 T H -1.2956
133 N H -1.4542
134 S H -0.4422
135 M H 0.5296
136 V H 0.2695
137 T H 0.0000
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H -0.0772
144 G H -0.3049
145 Y H 0.0000
146 F H 0.0000
147 P H -0.8165
148 E H -0.9769
149 P H -0.9300
150 V H -0.4911
151 T H -0.3329
152 V H -0.3006
153 T H -0.4014
154 W H 0.0000
155 N H -0.9746
156 S H -0.7724
157 G H -0.5780
158 S H -0.4471
159 L H -0.1071
160 S H -0.3089
161 S H -0.2667
162 G H -0.1709
163 V H 0.2483
164 H H -0.0592
165 T H 0.0476
166 F H 0.0000
167 P H -0.3952
168 A H 0.0971
169 V H 0.4781
170 L H 0.6390
171 Q H -0.2049
172 S H -0.7966
173 D H -1.6988
174 L H -0.6727
175 Y H 0.0000
176 T H 0.0000
177 L H 0.3006
178 S H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 T H 0.2387
183 V H 0.0000
184 P H 0.0493
185 S H -0.2281
186 S H -0.5249
187 T H -0.8081
188 W H 0.0000
189 P H -0.7260
190 S H -1.2895
191 E H -2.0605
192 T H -1.1879
193 V H 0.0000
194 T H -1.4853
195 C H 0.0000
196 N H -1.6126
197 V H 0.0000
198 A H -0.9987
199 H H 0.0000
200 P H -0.7947
201 A H -0.4309
202 S H -0.5078
203 S H -0.7312
204 T H -0.9706
205 K H -2.0633
206 V H -1.6993
207 D H -2.7618
208 K H -1.9142
209 K H -1.9899
210 I H 0.0000
211 V H 0.2663
212 P H -0.9322
213 R H -2.4517
214 D H -2.7282
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Laboratory of Theory of Biopolymers 2018