Project name: cf9ed2fe6393e22

Status: done

Started: 2024-04-19 18:15:57
Settings
Chain sequence(s) A: GRETYDYAMWCGDQEGFAFEEMDKCVIAGYDGYDY
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:15)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:16)
Show buried residues

Minimal score value
-3.1385
Maximal score value
0.9999
Average score
-1.0707
Total score value
-37.4744

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.9071
2 R A -3.1385
3 E A -3.0149
4 T A -1.7104
5 Y A -1.5941
6 D A -1.8721
7 Y A 0.1430
8 A A 0.0000
9 M A -0.1120
11 W A 0.3014
12 C A 0.0000
13 G A -0.9980
14 D A -2.4005
15 Q A -2.0145
16 E A -2.7156
17 G A -1.2407
18 F A -0.6160
19 A A -0.0512
20 F A 0.4303
21 E A -2.0403
22 E A -2.1261
23 M A -1.2669
24 D A -2.5923
25 K A -2.5094
26 C A -0.6404
27 V A 0.0000
29 I A 0.9999
30 A A 0.3822
31 G A -0.1667
32 Y A -0.8233
33 D A -1.9723
34 G A -1.4598
35 Y A -0.0962
36 D A -1.1456
37 Y A 0.4937
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Laboratory of Theory of Biopolymers 2018