Project name: A33 [mutate: ND386B, ND387B, ND381B, QE383B, ND386D, ND387D, QE383D, ND381D, QE175B, QE308B, QE175D, QE308D]

Status: done

Started: 2020-02-10 09:56:37
Settings
Chain sequence(s) A: DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
C: DIQMTQSPSSLSASVGDRVTITCKASQNVRTVVAWYQQKPGKAPKTLIYLASNRHTGVPSRFSGSGSGTDFTLTISSLQPEDFATYFCLQHWSYPLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
B: EVQLVESGGGLVQPGGSLRLSCAASGFAFSTYDMSWVRQAPGKGLEWVATISSGGSYTYYLDSVKGRFTISRDSSKNTLYLQMNSLRAEDTAVYYCAPTTVVPFAYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLS
D: EVQLVESGGGLVQPGGSLRLSCAASGFAFSTYDMSWVRQAPGKGLEWVATISSGGSYTYYLDSVKGRFTISRDSSKNTLYLQMNSLRAEDTAVYYCAPTTVVPFAYWGQGTLVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCPAPEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQEGNVFSCSVMHEALHNHYTQKSLSLS
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode Yes
Automated mutations No
Mutated residues ND381B,QE383B,ND387B,ND386B,QE175B,QE308B,QE175D,QE383D,ND381D,QE308D,ND387D,ND386D
Energy difference between WT (input) and mutated protein (by FoldX) 3.51285 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:04)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:04)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:04)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:04)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:04)
[INFO]       FoldX:    Building mutant model                                                       (00:00:05)
[CRITICAL]   FoldX:    FoldX encountered an error: FoldX didn't produce expected mutant file.      
                       Can't continue without it. This is unexpected and could indicate FoldX      
                       issues.                                                                     (00:00:06)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:43:44)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:47:55)
[INFO]       CABS:     Running CABS flex simulation                                                (01:07:05)
[INFO]       Analysis: Starting Aggrescan3D on model_10.pdb                                        (13:24:52)
[INFO]       Analysis: Starting Aggrescan3D on model_7.pdb                                         (13:25:38)
[INFO]       Analysis: Starting Aggrescan3D on model_9.pdb                                         (13:26:23)
[INFO]       Analysis: Starting Aggrescan3D on model_8.pdb                                         (13:27:06)
[INFO]       Analysis: Starting Aggrescan3D on model_11.pdb                                        (13:27:47)
[INFO]       Analysis: Starting Aggrescan3D on model_6.pdb                                         (13:28:27)
[INFO]       Analysis: Starting Aggrescan3D on model_4.pdb                                         (13:29:07)
[INFO]       Analysis: Starting Aggrescan3D on model_2.pdb                                         (13:29:49)
[INFO]       Analysis: Starting Aggrescan3D on model_5.pdb                                         (13:30:36)
[INFO]       Analysis: Starting Aggrescan3D on model_1.pdb                                         (13:31:21)
[INFO]       Analysis: Starting Aggrescan3D on model_0.pdb                                         (13:32:05)
[INFO]       Analysis: Starting Aggrescan3D on model_3.pdb                                         (13:32:52)
[INFO]       Analysis: Starting Aggrescan3D on input.pdb                                           (13:33:36)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (13:34:44)
[INFO]       Movie:    Creting movie with webm format                                              (13:49:46)
[INFO]       Main:     Simulation completed successfully.                                          (13:50:30)
Show buried residues

Minimal score value
-4.2638
Maximal score value
2.3593
Average score
-0.5962
Total score value
-781.0031

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D A -0.6413
2 I A -0.5906
3 Q A -1.5299
4 M A 0.0000
5 T A -1.0876
6 Q A 0.0000
7 S A -1.0341
8 P A -0.8673
9 S A -0.7103
10 S A -0.8392
11 L A -0.5151
12 S A -0.8718
13 A A 0.0000
14 S A -0.8904
15 V A 0.2624
16 G A -0.7460
17 D A -2.2226
18 R A -2.3780
19 V A 0.0000
20 T A -0.3211
21 I A 0.0000
22 T A -0.7174
23 C A 0.0000
24 K A -2.0361
25 A A 0.0000
26 S A -1.0636
27 Q A -1.3042
28 N A -0.7708
29 V A 0.6001
30 R A 0.0000
31 T A 0.1751
32 V A 0.0000
33 V A 0.0000
34 A A 0.0000
35 W A 0.0000
36 Y A 0.0000
37 Q A 0.0000
38 Q A 0.0000
39 K A -1.6688
40 P A -1.5902
41 G A -1.8016
42 K A -2.3072
43 A A 0.0000
44 P A -0.7831
45 K A -0.4458
46 T A 0.0000
47 L A 0.0000
48 I A 0.0000
49 Y A -0.9766
50 L A 0.0000
51 A A -0.8588
52 S A -1.3674
53 N A -2.4105
54 R A -2.8076
55 H A -1.5992
56 T A -0.5264
57 G A 0.0579
58 V A 1.1872
59 P A 0.5342
60 S A 0.6810
61 R A 0.0000
62 F A 0.9928
63 S A -0.1753
64 G A -0.6572
65 S A -0.5936
66 G A -0.8029
67 S A -0.8879
68 G A -0.6687
69 T A -0.7466
70 D A -1.3690
71 F A 0.0000
72 T A -0.6752
73 L A 0.0000
74 T A -0.1488
75 I A 0.0000
76 S A -0.7590
77 S A -0.1689
78 L A 1.0541
79 Q A 0.0000
80 P A -0.1227
81 E A 0.0000
82 D A -1.6693
83 F A -0.7156
84 A A 0.0000
85 T A 0.0000
86 Y A 0.0000
87 F A 0.0000
88 C A 0.0000
89 L A 0.0000
90 Q A 0.0000
91 H A 0.2438
92 W A 0.8276
93 S A 0.6028
94 Y A 0.7180
95 P A 0.0000
96 L A 0.0000
97 T A 0.0000
98 F A -0.5586
99 G A 0.0000
100 Q A -1.0905
101 G A 0.0000
102 T A 0.0000
103 K A -2.1497
104 V A 0.0000
105 E A -1.0049
106 I A 0.0000
107 K A 0.0000
108 R A -1.6296
109 T A -0.5354
110 V A -0.0621
111 A A -0.1901
112 A A -0.0844
113 P A 0.0000
114 S A -0.0657
115 V A 0.0347
116 F A 0.0000
117 I A 0.0000
118 F A 0.0000
119 P A 0.0000
120 P A 0.0000
121 S A 0.0000
122 D A -1.7840
123 E A -1.1960
124 Q A -0.7216
125 L A 0.0468
126 K A -1.1794
127 S A -1.0145
128 G A -0.9269
129 T A 0.0000
130 A A 0.0000
131 S A 0.0000
132 V A 0.0000
133 V A 0.0000
134 C A 0.0000
135 L A 0.0000
136 L A 0.0000
137 N A -0.0275
138 N A -0.6586
139 F A 0.0000
140 Y A -0.9690
141 P A -1.0864
142 R A -1.9831
143 E A -1.6160
144 A A -1.7984
145 K A -2.2657
146 V A -1.5675
147 Q A -1.7790
148 W A -1.3670
149 K A -2.5489
150 V A 0.0000
151 D A -3.0085
152 N A -3.2746
153 A A -2.8810
154 L A -1.7840
155 Q A -1.9820
156 S A -1.3389
157 G A -1.3183
158 N A -1.1542
159 S A -0.9524
160 Q A 0.0000
161 E A -1.3835
162 S A 0.0000
163 V A 0.5031
164 T A 0.0000
165 E A -0.7886
166 Q A 0.0000
167 D A -2.5599
168 S A -1.8437
169 K A -2.1766
170 D A -2.8096
171 S A -2.0295
172 T A 0.0000
173 Y A -0.7330
174 S A 0.0000
175 L A -0.2485
176 S A 0.0000
177 S A 0.0000
178 T A 0.0000
179 L A 0.0000
180 T A 0.0000
181 L A 0.0000
182 S A -1.7899
183 K A -2.5333
184 A A -2.1277
185 D A -2.8309
186 Y A -2.8293
187 E A -3.7237
188 K A -3.8964
189 H A 0.0000
190 K A -3.2416
191 V A -2.1853
192 Y A 0.0000
193 A A -1.0398
194 C A 0.0000
195 E A -1.4634
196 V A 0.0000
197 T A -1.0388
198 H A 0.0000
199 Q A -1.5630
200 G A -0.3531
201 L A 0.7983
202 S A -0.0310
203 S A -0.1617
204 P A -0.3773
205 V A -0.2106
206 T A -0.5668
207 K A -0.6396
208 S A -0.5961
209 F A -0.8013
210 N A -1.9459
211 R A -1.6140
212 G A -2.1008
213 E A -2.0684
214 C A -1.8700
1 D C -1.8758
2 I C 0.0000
3 Q C -1.7506
4 M C 0.0000
5 T C -0.9217
6 Q C -0.6747
7 S C -0.5553
8 P C 0.0000
9 S C -0.4137
10 S C -0.3400
11 L C 0.1123
12 S C -0.3671
13 A C 0.0000
14 S C -0.9302
15 V C -0.1562
16 G C -1.0753
17 D C -2.2436
18 R C -2.2171
19 V C -0.8327
20 T C -0.2755
21 I C 0.0000
22 T C -0.7231
23 C C 0.0000
24 K C -2.1311
25 A C 0.0000
26 S C -1.8217
27 Q C -2.1735
28 N C -1.8464
29 V C -0.5599
30 R C -1.9699
31 T C -0.8594
32 V C 0.3808
33 V C 0.0000
34 A C 0.0000
35 W C 0.0000
36 Y C 0.0000
37 Q C 0.0000
38 Q C 0.0000
39 K C -2.2746
40 P C -1.7154
41 G C -1.5756
42 K C -2.2130
43 A C 0.0000
44 P C 0.0000
45 K C -0.5214
46 T C 0.0000
47 L C 0.0000
48 I C -0.4289
49 Y C 0.0000
50 L C 0.8971
51 A C 0.5215
52 S C -0.5428
53 N C -1.7559
54 R C -2.2920
55 H C -1.5988
56 T C 0.0000
57 G C -1.2686
58 V C -0.5841
59 P C -0.2831
60 S C -0.6114
61 R C -0.9090
62 F C -0.1768
63 S C -0.4569
64 G C -0.7121
65 S C -0.9935
66 G C -1.1549
67 S C -1.0942
68 G C -1.1612
69 T C -1.5850
70 D C -1.7609
71 F C 0.0000
72 T C -1.0060
73 L C 0.0000
74 T C -0.5367
75 I C 0.0000
76 S C -0.8907
77 S C -0.8574
78 L C 0.0000
79 Q C -1.7729
80 P C -1.6191
81 E C -2.5623
82 D C -1.9625
83 F C 0.0000
84 A C -1.4295
85 T C 0.0000
86 Y C 0.0000
87 F C 0.0000
88 C C 0.0000
89 L C 0.0000
90 Q C 0.0000
91 H C 0.0000
92 W C 1.0605
93 S C 0.7264
94 Y C 1.6203
95 P C 0.7472
96 L C 0.0000
97 T C -0.7046
98 F C 0.0000
99 G C -0.8143
100 Q C -0.9907
101 G C -1.1011
102 T C 0.0000
103 K C -0.8174
104 V C 0.0000
105 E C -0.9461
106 I C -0.8058
107 K C -1.0204
108 R C -1.7233
109 T C -0.2963
110 V C 1.2623
111 A C 0.6050
112 A C 0.4777
113 P C 0.1255
114 S C 0.0000
115 V C 0.0000
116 F C 0.0000
117 I C 0.0000
118 F C 0.0000
119 P C 0.0000
120 P C -0.3680
121 S C 0.0000
122 D C -0.9176
123 E C -1.3079
124 Q C 0.0000
125 L C -0.8722
126 K C -1.8603
127 S C -1.3029
128 G C -1.0383
129 T C -0.8313
130 A C 0.0000
131 S C 0.0000
132 V C 0.0000
133 V C 0.0000
134 C C 0.0000
135 L C 0.0000
136 L C 0.0000
137 N C 0.0000
138 N C -0.4156
139 F C 0.0000
140 Y C -0.7304
141 P C 0.0000
142 R C -1.6866
143 E C -1.9315
144 A C -1.8526
145 K C -2.4762
146 V C -1.7299
147 Q C -1.7272
148 W C -0.5249
149 K C -0.4015
150 V C 0.1335
151 D C -0.6729
152 N C -1.1075
153 A C -0.0333
154 L C 1.1910
155 Q C 0.2528
156 S C -0.1860
157 G C -0.7875
158 N C -0.7027
159 S C -0.8019
160 Q C 0.0000
161 E C -1.3842
162 S C 0.0000
163 V C 0.2024
164 T C 0.0000
165 E C -1.7961
166 Q C -1.9302
167 D C -1.3410
168 S C -1.3251
169 K C -1.7332
170 D C -2.3030
171 S C -1.7746
172 T C 0.0000
173 Y C 0.0000
174 S C 0.0000
175 L C 0.0000
176 S C 0.0000
177 S C 0.0000
178 T C 0.0000
179 L C 0.0000
180 T C -0.3803
181 L C 0.0000
182 S C -1.0035
183 K C -1.3698
184 A C -1.0503
185 D C -1.4713
186 Y C 0.0000
187 E C -1.7638
188 K C -1.9121
189 H C -1.8999
190 K C -1.4256
191 V C 0.0000
192 Y C 0.0000
193 A C -0.1586
194 C C 0.0000
195 E C -1.1928
196 V C 0.0000
197 T C -1.4333
198 H C 0.0000
199 Q C -1.8168
200 G C -0.9887
201 L C 0.1492
202 S C -0.5036
203 S C -0.3469
204 P C -0.4250
205 V C -0.1464
206 T C -0.4059
207 K C 0.0000
208 S C -0.0221
209 F C 0.0000
210 N C 0.0000
211 R C -1.5035
212 G C -1.2146
213 E C 0.0000
214 C C 0.0830
1 E B -1.7913
2 V B -1.2787
3 Q B -1.1613
4 L B 0.0000
5 V B 1.3172
6 E B 0.0000
7 S B -0.4049
8 G B -0.9823
9 G B -0.7390
10 G B -0.3609
11 L B 0.1192
12 V B 0.0000
13 Q B -1.2130
14 P B -1.0618
15 G B -1.0755
16 G B -1.2509
17 S B -1.5085
18 L B 0.0000
19 R B -2.2307
20 L B 0.0000
21 S B -0.3364
22 C B 0.0000
23 A B -0.0410
24 A B 0.0000
25 S B -1.0462
26 G B -1.3192
27 F B 0.0000
28 A B -0.6391
29 F B -0.7149
30 S B -0.5020
31 T B -0.2961
32 Y B 0.0000
33 D B -0.2492
34 M B 0.0000
35 S B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B 0.0000
40 A B -0.5106
41 P B -1.3826
42 G B -1.7895
43 K B -2.2842
44 G B -1.1917
45 L B 0.0000
46 E B -0.7118
47 W B 0.0000
48 V B 0.0000
49 A B 0.0000
50 T B 0.0000
51 I B 0.0000
52 S B 0.0000
53 S B -0.5969
54 G B -0.7996
55 G B -0.7278
56 S B -0.3925
57 Y B 0.2367
58 T B 0.4851
59 Y B 1.1028
60 Y B 1.2693
61 L B 0.0000
62 D B 0.0839
63 S B 0.2056
64 V B 1.1059
65 K B -0.0023
66 G B -0.2573
67 R B -0.2805
68 F B 0.0000
69 T B -0.0339
70 I B 0.3388
71 S B -0.1286
72 R B -0.8993
73 D B -1.3918
74 S B -1.3934
75 S B -1.4070
76 K B -2.2955
77 N B -1.6477
78 T B -0.7395
79 L B 0.0000
80 Y B 0.0192
81 L B 0.0000
82 Q B -1.3284
83 M B -1.3511
84 N B -2.0697
85 S B -1.4005
86 L B 0.0000
87 R B -1.0491
88 A B -1.2385
89 E B -2.5059
90 D B -2.6028
91 T B -1.1706
92 A B 0.0000
93 V B -0.0178
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 P B 0.0000
99 T B 0.0000
100 T B 0.4321
101 V B 1.5177
102 V B 1.0657
103 P B 0.0000
104 F B 0.0000
105 A B -0.0698
106 Y B -0.2803
107 W B 0.0000
108 G B 0.0000
109 Q B -0.4789
110 G B -0.6282
111 T B 0.0000
112 L B 0.2043
113 V B 0.0000
114 T B 0.0000
115 V B -1.1716
116 S B -1.2886
117 S B -0.7797
118 A B -0.2105
119 S B 0.0491
120 T B -0.2530
121 K B -0.7323
122 G B -0.8373
123 P B -0.7040
124 S B -0.5756
125 V B -0.1856
126 F B 0.0000
127 P B -0.6394
128 L B 0.0000
129 A B 0.0000
130 P B 0.0000
131 C B 0.0000
132 S B -0.5382
133 R B -1.1276
134 S B -1.1036
135 T B -1.1578
136 S B -0.9351
137 E B -1.9501
138 S B 0.0000
139 T B -0.7534
140 A B 0.0000
141 A B 0.0000
142 L B 0.0000
143 G B 0.0000
144 C B 0.0000
145 L B 0.0000
146 V B 0.0000
147 K B 0.0000
148 D B -0.2636
149 Y B 0.0000
150 F B 0.8621
151 P B 0.0912
152 E B -0.5381
153 P B -0.6247
154 V B 0.0000
155 T B -0.3476
156 V B 0.2188
157 S B -0.2576
158 W B -0.7329
159 N B -1.5921
160 S B -1.0627
161 G B -0.7969
162 A B 0.0000
163 L B -0.3104
164 T B -0.3502
165 S B -0.2774
166 G B -0.2868
167 V B 0.1328
168 H B 0.0000
169 T B 0.2146
170 F B 1.0342
171 P B 0.6890
172 A B 0.8906
173 V B 0.0000
174 L B 1.5917
175 E B 0.5939 mutated: QE175B
176 S B -0.2361
177 S B -0.1797
178 G B 0.4550
179 L B 1.5469
180 Y B 1.2520
181 S B 0.0000
182 L B 0.7421
183 S B 0.4328
184 S B 0.5342
185 V B 0.0000
186 V B 0.0000
187 T B -0.0241
188 V B 0.0000
189 P B -0.6956
190 S B -0.8551
191 S B 0.0000
192 S B -0.3701
193 L B 0.0000
194 G B -0.4308
195 T B 0.0000
196 K B 0.0000
197 T B -0.7999
198 Y B 0.0000
199 T B -1.7950
200 C B 0.0000
201 N B -1.7459
202 V B -1.0784
203 D B -2.1211
204 H B 0.0000
205 K B -2.8547
206 P B -1.6948
207 S B -1.8910
208 N B -2.5396
209 T B -2.1014
210 K B -2.6563
211 V B -1.3883
212 D B -2.7086
213 K B -2.2753
214 R B -2.7111
215 V B 0.0000
216 E B 0.0000
217 S B -0.8041
218 K B 0.0000
219 Y B 0.3802
220 G B 0.0000
221 P B 0.0000
222 P B -0.4070
223 C B -0.3800
224 P B -0.5475
225 P B -0.2720
226 C B 0.0471
227 P B -0.2859
228 A B -0.3987
229 P B -0.0285
230 E B 0.0000
231 F B 0.3972
232 L B 0.0000
233 G B 0.0000
234 G B -0.5130
235 P B 0.0000
236 S B 0.1803
237 V B 0.0000
238 F B 2.3593
239 L B 0.0000
240 F B 1.5893
241 P B 0.2961
242 P B -0.3111
243 K B -1.1258
244 P B -1.5768
245 K B -2.5012
246 D B -1.9518
247 T B 0.0000
248 L B 0.5311
249 M B 0.0000
250 I B 1.4414
251 S B -0.0857
252 R B -1.3572
253 T B -0.7567
254 P B -0.8378
255 E B -1.6506
256 V B 0.0000
257 T B 0.2639
258 C B 0.0000
259 V B 1.2167
260 V B 0.0000
261 V B 0.0257
262 D B 0.0000
263 V B 0.0000
264 S B 0.0000
265 Q B -1.0638
266 E B -1.7640
267 D B -2.8456
268 P B 0.0000
269 E B -2.0070
270 V B -1.0053
271 Q B -1.2107
272 F B 0.0000
273 N B -1.2510
274 W B -0.6974
275 Y B -0.6108
276 V B 0.0000
277 D B -1.8287
278 G B -0.5204
279 V B 0.3752
280 E B -1.3121
281 V B -1.0624
282 H B -1.9612
283 N B -2.3035
284 A B 0.0000
285 K B -2.4328
286 T B -2.0815
287 K B -2.8179
288 P B -2.9886
289 R B -4.1007
290 E B -4.2638
291 E B -3.6674
292 Q B -2.0282
293 F B 0.0389
294 N B 0.0000
295 S B 0.0000
296 T B -1.8814
297 Y B 0.0000
298 R B -2.9120
299 V B 0.0000
300 V B -0.9698
301 S B 0.0000
302 V B -1.0517
303 L B 0.0000
304 T B -0.7825
305 V B 0.0000
306 L B 0.8970
307 H B -0.2294
308 E B -1.4046 mutated: QE308B
309 D B -1.2540
310 W B 0.0000
311 L B 0.3236
312 N B 0.0000
313 G B -1.7640
314 K B 0.0000
315 E B -2.0944
316 Y B 0.0000
317 K B -1.4607
318 C B 0.0000
319 K B -1.0454
320 V B 0.0000
321 S B 0.0000
322 N B 0.0000
323 K B -1.9499
324 G B -1.4155
325 L B 0.0000
326 P B 0.0000
327 S B 0.0000
328 S B -0.8775
329 I B 0.0000
330 E B -0.8743
331 K B -0.7441
332 T B -0.7817
333 I B 0.0000
334 S B -1.6567
335 K B -2.7866
336 A B -2.3583
337 K B -2.8729
338 G B -1.6328
339 Q B -1.5430
340 P B -1.2510
341 R B -1.3928
342 E B -1.8762
343 P B -1.0817
344 Q B -1.0225
345 V B 0.0000
346 Y B 0.0000
347 T B -0.5683
348 L B -0.1786
349 P B 0.0000
350 P B -0.2957
351 S B -0.5753
352 Q B 0.0000
353 E B -2.1869
354 E B -1.4838
355 M B -0.2141
356 T B -0.7617
357 K B -1.5505
358 N B -2.2358
359 Q B 0.0000
360 V B 0.0000
361 S B 0.0000
362 L B 0.0000
363 T B 0.0000
364 C B 0.0000
365 L B 0.0000
366 V B 0.0000
367 K B 0.0000
368 G B 0.0000
369 F B 0.0000
370 Y B -0.2209
371 P B -0.9679
372 S B -1.2204
373 D B -1.7123
374 I B -0.1344
375 A B -0.0968
376 V B -0.4355
377 E B -1.4573
378 W B 0.0000
379 E B -1.8657
380 S B -1.6008
381 D B -2.2855 mutated: ND381B
382 G B -2.0221
383 E B 0.0000 mutated: QE383B
384 P B -1.5199
385 E B -2.0259
386 D B 0.0000 mutated: ND386B
387 D B -1.7783 mutated: ND387B
388 Y B -0.4663
389 K B -0.5759
390 T B -0.1854
391 T B 0.0000
392 P B -0.0719
393 P B 0.2460
394 V B 0.0000
395 L B 1.3068
396 D B 0.3545
397 S B -0.6539
398 D B -1.0062
399 G B -0.5633
400 S B -0.0180
401 F B 0.5347
402 F B 0.0000
403 L B 0.0000
404 Y B 0.0000
405 S B 0.0000
406 R B 0.0000
407 L B 0.0000
408 T B 0.0000
409 V B 0.0000
410 D B -2.2601
411 K B -2.7949
412 S B -2.1637
413 R B -2.6161
414 W B -2.1133
415 Q B -2.8655
416 E B -3.2286
417 G B -2.0772
418 N B -1.1111
419 V B 0.7752
420 F B 0.0000
421 S B -1.1213
422 C B 0.0000
423 S B -0.8382
424 V B 0.0000
425 M B -0.1969
426 H B 0.0000
427 E B -0.9368
428 A B -0.0471
429 L B 0.8723
430 H B -0.4984
431 N B -1.0041
432 H B -0.7976
433 Y B 0.2650
434 T B 0.0000
435 Q B -1.2110
436 K B -1.1376
437 S B -0.4265
438 L B 0.0000
439 S B 0.2374
440 L B -0.0773
441 S B -0.9747
1 E D -1.7603
2 V D -0.6820
3 Q D -0.5337
4 L D 0.0000
5 V D 0.4165
6 E D 0.0000
7 S D -0.3580
8 G D -0.6617
9 G D -0.7595
10 G D -0.3298
11 L D 0.3695
12 V D 1.1566
13 Q D 0.5330
14 P D 0.0000
15 G D -0.3393
16 G D -0.6329
17 S D -0.7233
18 L D 0.0000
19 R D -1.1831
20 L D 0.0000
21 S D -0.4064
22 C D 0.0000
23 A D -0.1159
24 A D 0.0000
25 S D -0.0059
26 G D -0.0661
27 F D 0.6969
28 A D 0.1548
29 F D 0.0000
30 S D -0.4528
31 T D 0.2724
32 Y D 0.8084
33 D D 0.0000
34 M D 0.0000
35 S D 0.0000
36 W D 0.0000
37 V D 0.0000
38 R D 0.0000
39 Q D 0.0000
40 A D -0.8764
41 P D -1.4211
42 G D -1.5925
43 K D -1.8104
44 G D -0.9695
45 L D 0.0000
46 E D 0.0000
47 W D 0.0000
48 V D 0.0000
49 A D 0.0000
50 T D 0.0000
51 I D 0.0000
52 S D -0.0152
53 S D -0.3939
54 G D 0.0700
55 G D 0.5776
56 S D 0.0000
57 Y D 1.7889
58 T D 1.5018
59 Y D 1.9425
60 Y D 1.6282
61 L D 0.0380
62 D D -1.6276
63 S D -1.5302
64 V D 0.0000
65 K D -2.7035
66 G D -1.8699
67 R D -2.3147
68 F D -1.0289
69 T D -0.4943
70 I D 0.0659
71 S D -0.7948
72 R D -2.4051
73 D D -2.4050
74 S D -1.6136
75 S D -1.5048
76 K D -2.2996
77 N D -1.4422
78 T D -1.3657
79 L D 0.0000
80 Y D -0.4356
81 L D 0.0000
82 Q D -1.1062
83 M D 0.0000
84 N D -1.7377
85 S D -1.4155
86 L D -1.5398
87 R D -2.1392
88 A D -0.9592
89 E D -1.0782
90 D D -0.4169
91 T D -0.1458
92 A D 0.0000
93 V D 0.0285
94 Y D 0.0000
95 Y D 0.0000
96 C D 0.0000
97 A D 0.0000
98 P D 0.0000
99 T D 0.0000
100 T D 0.0000
101 V D 1.8455
102 V D 1.0151
103 P D 0.0000
104 F D 0.0000
105 A D 0.0000
106 Y D 0.0000
107 W D 0.1058
108 G D -0.3664
109 Q D -0.3053
110 G D -0.3564
111 T D 0.2534
112 L D 0.6337
113 V D 0.0000
114 T D 0.0000
115 V D 1.0418
116 S D 0.3340
117 S D 0.0350
118 A D 0.1708
119 S D -0.0980
120 T D -0.3703
121 K D -0.3597
122 G D -0.8189
123 P D -0.5650
124 S D -0.2315
125 V D -0.2797
126 F D 0.0000
127 P D -0.5915
128 L D 0.0000
129 A D 0.0000
130 P D 0.0000
131 C D 0.0000
132 S D 0.0000
133 R D 0.0000
134 S D -0.3615
135 T D -0.2289
136 S D -0.6628
137 E D 0.0000
138 S D -0.3602
139 T D -0.1288
140 A D 0.0000
141 A D 0.0000
142 L D 0.0000
143 G D -0.0562
144 C D 0.0000
145 L D 0.0000
146 V D 0.0000
147 K D 0.0000
148 D D -0.1984
149 Y D 0.0000
150 F D 0.4331
151 P D 0.0000
152 E D -0.9975
153 P D -0.8444
154 V D -0.5803
155 T D -0.5835
156 V D 0.0000
157 S D -0.7390
158 W D 0.0000
159 N D -1.4701
160 S D 0.0000
161 G D -1.4095
162 A D -0.6405
163 L D -0.3475
164 T D -0.4364
165 S D -0.5474
166 G D -0.5545
167 V D 0.0525
168 H D 0.0000
169 T D 0.0000
170 F D 1.0038
171 P D 0.5545
172 A D 0.6124
173 V D 0.8746
174 L D 1.5860
175 E D 0.4751 mutated: QE175D
176 S D -0.1323
177 S D -0.2541
178 G D 0.2130
179 L D 0.8940
180 Y D 0.0000
181 S D 0.0000
182 L D 0.0000
183 S D 0.0000
184 S D 0.0000
185 V D 0.0000
186 V D 0.0000
187 T D 0.0000
188 V D 0.0000
189 P D -0.1002
190 S D 0.0000
191 S D -0.1490
192 S D -0.2105
193 L D 0.6936
194 G D -0.4745
195 T D 0.0000
196 K D -2.0572
197 T D -1.6810
198 Y D 0.0000
199 T D -1.9416
200 C D 0.0000
201 N D -1.9660
202 V D 0.0000
203 D D -1.8396
204 H D 0.0000
205 K D -2.2763
206 P D -1.5151
207 S D -1.5812
208 N D -2.3193
209 T D -1.9080
210 K D -2.6837
211 V D -1.8225
212 D D -2.6718
213 K D 0.0000
214 R D -2.4378
215 V D 0.0000
216 E D -1.2596
217 S D -1.2546
218 K D -1.6858
219 Y D -1.3412
220 G D -1.2251
221 P D -0.9973
222 P D -0.5572
223 C D 0.0000
224 P D 0.0000
225 P D 0.0000
226 C D 0.0000
227 P D -0.3958
228 A D 0.0000
229 P D -0.1096
230 E D -0.5835
231 F D 1.2176
232 L D 1.3782
233 G D 0.2719
234 G D -0.2680
235 P D -0.0508
236 S D -0.1178
237 V D 0.0000
238 F D 1.7178
239 L D 1.0662
240 F D 1.1764
241 P D 0.0939
242 P D -1.0293
243 K D -2.5156
244 P D -2.4686
245 K D -3.2095
246 D D -2.9291
247 T D -1.4297
248 L D -0.2977
249 M D 0.0000
250 I D -0.3423
251 S D -0.5309
252 R D -1.1162
253 T D -1.0797
254 P D 0.0000
255 E D -0.8854
256 V D 0.0000
257 T D 0.3372
258 C D 0.0000
259 V D 0.5471
260 V D 0.0000
261 V D -0.1978
262 D D -0.4626
263 V D 0.0000
264 S D 0.0000
265 Q D -1.6030
266 E D -2.2176
267 D D -1.9684
268 P D -2.1662
269 E D -2.7330
270 V D -1.6667
271 Q D -1.5167
272 F D 0.0000
273 N D -1.5360
274 W D 0.0000
275 Y D -1.0812
276 V D -0.7085
277 D D -2.0275
278 G D -0.8555
279 V D 0.4110
280 E D -1.3604
281 V D -0.5409
282 H D -1.4632
283 N D -1.5735
284 A D -1.3453
285 K D -2.1085
286 T D -1.9750
287 K D -2.5283
288 P D -2.0934
289 R D -2.6303
290 E D -2.5469
291 E D -2.8999
292 Q D -2.0415
293 F D -1.6662
294 N D -1.6712
295 S D -0.9612
296 T D -0.9968
297 Y D 0.0000
298 R D -1.6421
299 V D 0.0000
300 V D -0.8734
301 S D 0.0000
302 V D -0.5155
303 L D -0.0489
304 T D -0.4144
305 V D 0.0000
306 L D 0.5870
307 H D -0.6434
308 E D -1.9267 mutated: QE308D
309 D D -1.5345
310 W D -1.1550
311 L D -1.2856
312 N D -2.2763
313 G D -2.4078
314 K D -2.1747
315 E D -2.1207
316 Y D 0.0000
317 K D -1.5099
318 C D 0.0000
319 K D -1.8103
320 V D 0.0000
321 S D -1.3129
322 N D 0.0000
323 K D -2.3116
324 G D -1.8973
325 L D -1.2038
326 P D -0.7302
327 S D -0.8571
328 S D -0.9618
329 I D -0.8276
330 E D -1.7498
331 K D -0.8905
332 T D -0.6305
333 I D -0.2475
334 S D -1.3379
335 K D -1.6708
336 A D -1.4222
337 K D -1.7395
338 G D -1.3539
339 Q D -1.2437
340 P D -1.2490
341 R D -1.5324
342 E D -2.1409
343 P D 0.0000
344 Q D -1.5255
345 V D -0.7242
346 Y D 0.0000
347 T D 0.0029
348 L D 0.0000
349 P D 0.0000
350 P D -0.1464
351 S D -0.5711
352 Q D -1.1046
353 E D -1.9612
354 E D -1.1147
355 M D -0.2587
356 T D -1.3728
357 K D -2.5234
358 N D -2.4832
359 Q D 0.0000
360 V D 0.0000
361 S D 0.0000
362 L D 0.0000
363 T D 0.0000
364 C D 0.0000
365 L D 0.0000
366 V D 0.0000
367 K D 0.0000
368 G D -1.2932
369 F D -1.0533
370 Y D 0.0000
371 P D -0.8452
372 S D -0.8185
373 D D -0.8842
374 I D 0.0000
375 A D -0.1828
376 V D 0.0000
377 E D -1.1137
378 W D 0.0000
379 E D -1.5842
380 S D 0.0000
381 D D -1.2215 mutated: ND381D
382 G D -1.8150
383 E D -2.8354 mutated: QE383D
384 P D -2.2201
385 E D -2.6483
386 D D -3.0228 mutated: ND386D
387 D D -1.9478 mutated: ND387D
388 Y D -0.7183
389 K D 0.0488
390 T D -0.0064
391 T D 0.0000
392 P D 0.0772
393 P D -0.0809
394 V D 0.0698
395 L D -0.6780
396 D D -2.0708
397 S D -1.5984
398 D D -1.8923
399 G D -1.3363
400 S D -1.0158
401 F D 0.0000
402 F D 0.0000
403 L D 0.0000
404 Y D 0.0000
405 S D 0.0000
406 R D 0.0000
407 L D 0.0000
408 T D -0.8165
409 V D 0.0000
410 D D -1.8623
411 K D -2.4524
412 S D -2.1086
413 R D -2.7140
414 W D -1.6271
415 Q D -2.5962
416 E D -2.8758
417 G D -1.6931
418 N D -0.5906
419 V D 1.2823
420 F D 1.4226
421 S D 0.1394
422 C D 0.0000
423 S D 0.0000
424 V D 0.0000
425 M D -0.1456
426 H D 0.0000
427 E D 0.0000
428 A D -0.6036
429 L D 0.2946
430 H D -0.7664
431 N D -1.1459
432 H D -0.6645
433 Y D -0.2140
434 T D -0.9552
435 Q D -1.1909
436 K D 0.0000
437 S D 0.0689
438 L D 0.0000
439 S D 0.7008
440 L D 1.0112
441 S D 0.1915
Download PDB file
View in 3Dmol
Play the video

CABS-flex predictions of flexibility of input structure

In dynamic mode, A3D analysis is performed on the set of models reflecting fluctuations of the input structure (predicted by CABS-flex method, models are numbered from 0 to 11) and the input model. Their A3D scores are provided below in the table.
The right panel presents comparison of the most aggregation prone model (with the highest A3D score, -0.5962 in this case) with the input model (the most aggregation prone model in blue, input in red) and RMSF plot which shows the extent of residue fluctuations in Angstroms (predicted by CABS-flex).

Model
Average A3D Score
model_3 -0.5962 View CSV PDB
model_8 -0.6194 View CSV PDB
model_5 -0.6237 View CSV PDB
model_10 -0.6277 View CSV PDB
model_11 -0.6302 View CSV PDB
model_4 -0.6383 View CSV PDB
model_7 -0.6557 View CSV PDB
model_9 -0.6562 View CSV PDB
model_0 -0.6601 View CSV PDB
model_1 -0.6645 View CSV PDB
model_6 -0.6648 View CSV PDB
model_2 -0.6843 View CSV PDB
input -0.7173 View CSV PDB
 

Laboratory of Theory of Biopolymers 2018