Project name: CTMAD2 [mutate: AH8C]

Status: done

Started: 2020-11-17 16:29:36
Settings
Chain sequence(s) C: TLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEK
input PDB
Selected Chain(s) C
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues AH8C
Energy difference between WT (input) and mutated protein (by FoldX) 0.104338 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:02:12)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:17)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:05)
[CRITICAL]   pyMol:    Pymol encountered an error: /bin/sh: pymol: command not found Movie         
                       creation failed.                                                            (00:03:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:06)
Show buried residues

Minimal score value
-2.317
Maximal score value
1.8203
Average score
-0.6459
Total score value
-27.1281

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 T C 0.2127
2 L C 1.4967
3 S C 0.3428
4 L C 1.7872
5 L C 1.8203
6 T C -0.0546
7 K C -1.8841
8 H C -1.6036 mutated: AH8C
9 K C -1.7429
10 L C 0.1153
11 H C -0.4193
12 I C 1.2100
13 K C -1.6347
14 K C -1.8287
15 L C 0.4828
16 E C -1.5249
17 D C -1.3927
18 C C -0.1220
19 D C -2.1387
20 R C -2.2684
21 K C -1.9918
22 A C 0.0534
23 V C 1.6006
24 H C -0.8172
25 Q C -0.6436
26 I C 1.6757
27 D C -0.9110
28 Q C -1.1994
29 L C 0.5271
30 Q C -0.9300
31 R C -2.2599
32 E C -1.9250
33 Q C -1.2148
34 R C -1.5154
35 H C -1.0241
36 L C 0.4796
37 K C -1.5443
38 R C -2.3170
39 Q C -1.1563
40 L C 1.0059
41 E C -1.8467
42 K C -2.0271
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Laboratory of Theory of Biopolymers 2018