Project name: Victor Igbokwe

Status: done

Started: 2024-04-20 14:23:55
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Chain sequence(s) A: DAPTVNDVTSDATQVTGQAEPNSTVKLTFPDGTTATGTADDQGNYTIDIPSNVDLNGGEELQVTATDKDGNTSEPSSANVTDTTAPDAPTVNDVTSDATQVTGQAEPNSTVKLTFPDGTTATGTADDQGNYTIDIPSNVDLNGGEELQVTATDKDGNTSESTNTTII
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:47)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:48)
Show buried residues

Minimal score value
-3.7743
Maximal score value
0.6323
Average score
-1.5071
Total score value
-251.6918

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
29 D A -2.7913
30 A A -1.9348
31 P A 0.0000
32 T A -1.2220
33 V A -1.3655
34 N A -2.1330
35 D A -2.5372
36 V A 0.0000
37 T A -1.8333
38 S A -1.9913
39 D A -2.3781
40 A A -1.5056
41 T A -1.4601
42 Q A -1.7549
43 V A 0.0000
44 T A -1.5094
45 G A 0.0000
46 Q A -2.4578
47 A A -2.7702
48 E A -3.5650
49 P A -3.1801
50 N A -2.7496
51 S A 0.0000
52 T A -1.2755
53 V A 0.0000
54 K A -0.8039
55 L A 0.0000
56 T A -1.2186
57 F A 0.0000
58 P A -1.8293
59 D A -2.3130
60 G A -1.4524
61 T A -1.0100
62 T A -0.6776
63 A A -0.5790
64 T A -0.6494
65 G A -0.8867
66 T A -1.2267
67 A A 0.0000
68 D A -3.3302
69 D A -3.5673
70 Q A -3.3249
71 G A 0.0000
72 N A -2.9387
73 Y A 0.0000
74 T A -1.1984
75 I A 0.0000
76 D A -2.1293
77 I A -1.4553
78 P A -1.2966
79 S A -1.3460
80 N A -1.6946
81 V A -1.7701
82 D A -2.6900
83 L A -2.1654
84 N A -2.2328
85 G A -2.2853
86 G A -1.8209
87 E A -2.2410
88 E A -2.8800
89 L A 0.0000
90 Q A -1.8791
91 V A 0.0000
92 T A -1.1976
93 A A 0.0000
94 T A -2.5244
95 D A -3.4240
96 K A -3.4439
97 D A -3.4962
98 G A -2.7596
99 N A -3.0325
100 T A -2.2228
101 S A -2.2490
102 E A -2.5641
103 P A -1.7070
104 S A -1.0587
105 S A -1.5666
106 A A -2.1253
107 N A -2.7247
108 V A 0.0000
109 T A -1.6933
110 D A -2.0037
111 T A -1.3101
112 T A -1.4227
113 A A -1.7180
114 P A -1.7507
115 D A -2.5491
116 A A -1.9651
117 P A 0.0000
118 T A -1.2788
119 V A -1.2695
120 N A -2.0082
121 D A -1.9221
122 V A 0.0000
123 T A -0.8366
124 S A -1.4816
125 D A -2.1769
126 A A -1.5808
127 T A -1.5511
128 Q A -1.8091
129 V A 0.0000
130 T A -1.2742
131 G A 0.0000
132 Q A -1.8216
133 A A -2.3926
134 E A -3.2957
135 P A -3.2287
136 N A -3.2925
137 S A 0.0000
138 T A -1.3242
139 V A 0.0000
140 K A -0.7546
141 L A 0.0000
142 T A -1.2174
143 F A 0.0000
144 P A -2.1504
145 D A -2.2961
146 G A -1.5086
147 T A -0.8586
148 T A -0.7007
149 A A -0.6100
150 T A -0.6658
151 G A -0.9312
152 T A -1.3618
153 A A 0.0000
154 D A -3.5977
155 D A -3.7743
156 Q A -3.2648
157 G A 0.0000
158 N A -2.3821
159 Y A 0.0000
160 T A -1.0690
161 I A 0.0000
162 D A -2.2217
163 I A 0.0000
164 P A -1.4251
165 S A -1.6797
166 N A -1.7515
167 V A -1.6300
168 D A -2.6481
169 L A 0.0000
170 N A -2.2986
171 G A -1.1250
172 G A -1.1659
173 E A -1.9302
174 E A -2.3457
175 L A 0.0000
176 Q A -1.6050
177 V A 0.0000
178 T A -1.2221
179 A A 0.0000
180 T A 0.0000
181 D A -2.4237
182 K A -3.1135
183 D A -3.0600
184 G A -2.0966
185 N A -1.5941
186 T A -1.4722
187 S A 0.0000
188 E A -2.2722
189 S A -1.7243
190 T A -1.4047
191 N A -1.7838
192 T A -1.5471
193 T A -1.2797
194 I A 0.0000
195 I A 0.6323
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Laboratory of Theory of Biopolymers 2018