Project name: 2ALF unbound default A HAGPIA ss: CCCCCC

Status: done

submitted: 2015-02-20 17:44:14, status changed: 2015-03-13 10:49:40

Project settings
Peptide sequence HAGPIA
Simulation mc cycles50
Peptide secondary structure CCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
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model_7 Download
model_8 Download
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model_10 Download

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 78.0785 1.54972 10.4138 121
cluster_2.pdb ( medoid) 40.8364 3.30588 11.4274 135
cluster_3.pdb ( medoid) 34.6727 4.96067 23.3147 172
cluster_4.pdb ( medoid) 30.8328 5.12442 28.1105 158
cluster_5.pdb ( medoid) 19.3312 4.75914 14.4806 92
cluster_6.pdb ( medoid) 12.9283 10.3649 31.9242 134
cluster_7.pdb ( medoid) 6.73864 12.6138 33.3277 85
cluster_8.pdb ( medoid) 4.10988 9.00269 17.5342 37
cluster_9.pdb ( medoid) 2.32035 18.1007 32.4791 42
cluster_10.pdb ( medoid) 2.18236 10.9973 28.6724 24
Laboratory of Theory of Biopolymers 2015