Project name: 2b9h bound default 2 runA RRNLKGLNLNLH ss: CCCCCCCCCCCC

Status: done

submitted: 2015-02-23 11:18:37, status changed: 2015-03-13 10:49:46

Project settings
Peptide sequence RRNLKGLNLNLH
Simulation mc cycles50
Peptide secondary structure CCCCCCCCCCCC
Flexible regions
Unlikely to bind regions
Re-submit project
Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download

Download all files
Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 27.595 5.72566 14.0136 158
cluster_2.pdb ( medoid) 23.4094 11.4484 33.2864 268
cluster_3.pdb ( medoid) 18.0221 7.1024 26.284 128
cluster_4.pdb ( medoid) 17.4691 7.21275 35.8549 126
cluster_5.pdb ( medoid) 7.3761 13.015 44.1029 96
cluster_6.pdb ( medoid) 5.48649 13.6699 44.7193 75
cluster_7.pdb ( medoid) 5.46833 17.5556 32.9952 96
cluster_8.pdb ( medoid) 4.23734 6.37193 13.0517 27
cluster_9.pdb ( medoid) 2.13802 7.01584 20.1033 15
cluster_10.pdb ( medoid) 1.00973 10.894 19.5222 11
Laboratory of Theory of Biopolymers 2015