Project name: parcial cesar

Status: done

submitted: 2018-01-10 16:57:37, status changed: 2018-01-10 21:44:51

Project settings
Protein sequence(s) TPPTLNITEESHVIDTGDSLSISCRGQHPLEWAWPGAQEAPATGDKDSERPYCKVLLLHEVHANDTGSYVCYYTAASSYVFVRDFEQPFINKPDTLLVNRKDAMWVPCLVSIPGLNVTLRSQSSVLWPDGQEVVWDDRRGMLVSTPLLHDALYLQCETTWQDFLSNPFLVHINTEILKSIDNEWRKTQCMPREVAIDVGKEFGVATNTFFKPPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFEITVPLSQGPKPVTISFANHTSCRCM input pdb
Peptide sequence PCAIWF
Simulation mc cycles50
Peptide secondary structure psipred CCCCCC
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Zoom/rotate predicted model of the complex using mouse. Click the "View" button on the right panel to load the appropriate model. View in JSmol (pure html5/js) if you got rendering problems.
Models are ranked and numbered according to their occurrence in docking trajectory (1 = most probable result).
Representative conformations
model_1 Download
model_2 Download
model_3 Download
model_4 Download
model_5 Download
model_6 Download
model_7 Download
model_8 Download
model_9 Download
model_10 Download
 

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Click the "View" button to load the contact map of appropriate model.
Representative conformations
model_1 View
model_2 View
model_3 View
model_4 View
model_5 View
model_6 View
model_7 View
model_8 View
model_9 View
model_10 View

Receptor residuePeptide residue
Receptor residuePeptide residue
Receptor residuePeptide residue
Select trajectory from the right panel to display animation in JSmol. Note that it may hangs browser window for few minutes or ever.
Trajectories
replica_1 Download
replica_2 Download
replica_3 Download
replica_4 Download
replica_5 Download
replica_6 Download
replica_7 Download
replica_8 Download
replica_9 Download
replica_10 Download
Selected model: model_1.pdb (most representative model of the best cluster) download the model
Details about clusters
cluster namecluster density average rmsdmax rmsdnumber of elements
cluster_1.pdb ( medoid) 32.9846 7.97342 29.7274 263
cluster_2.pdb ( medoid) 26.0479 4.64528 14.8034 121
cluster_3.pdb ( medoid) 18.8383 7.11319 22.7573 134
cluster_4.pdb ( medoid) 11.9295 8.0473 45.4478 96
cluster_5.pdb ( medoid) 10.5534 5.11685 18.7776 54
cluster_6.pdb ( medoid) 10.4415 9.96027 29.2591 104
cluster_7.pdb ( medoid) 9.83813 8.33492 29.1921 82
cluster_8.pdb ( medoid) 6.33685 7.41693 26.1929 47
cluster_9.pdb ( medoid) 4.84207 13.8371 43.3591 67
cluster_10.pdb ( medoid) 2.22783 14.3637 32.7438 32

 
Laboratory of Theory of Biopolymers 2015